Gene : Medtr6g088665 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10209:SF146 - 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED Description:  2OG-Fe(II) oxygenase family oxidoreductase
Genomic Order:  3690 Name:  ? Medtr6g088665
Secondary Identifier:  ? PAC:31102320
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ETHYL-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g088665 0.5kb upstream 0.5kb upstream 5322 true chr6: 33777376-33782697 Medicago truncatula
Medtr6g088665 0.5kb upstream 0.5kb upstream 500 false chr6: 33782198-33782697 Medicago truncatula
Medtr6g088665 0.5kb downstream 0.5kb downstream 5322 true chr6: 33776876-33782197 Medicago truncatula
Medtr6g088665 0.5kb downstream 0.5kb downstream 500 false chr6: 33776876-33777375 Medicago truncatula
Medtr6g088665 1.0kb upstream 1.0kb upstream 5822 true chr6: 33777376-33783197 Medicago truncatula
Medtr6g088665 1.0kb upstream 1.0kb upstream 1000 false chr6: 33782198-33783197 Medicago truncatula
Medtr6g088665 1.0kb downstream 1.0kb downstream 5822 true chr6: 33776376-33782197 Medicago truncatula
Medtr6g088665 1.0kb downstream 1.0kb downstream 1000 false chr6: 33776376-33777375 Medicago truncatula
Medtr6g088665 2.0kb upstream 2.0kb upstream 6822 true chr6: 33777376-33784197 Medicago truncatula
Medtr6g088665 2.0kb upstream 2.0kb upstream 2000 false chr6: 33782198-33784197 Medicago truncatula
Medtr6g088665 2.0kb downstream 2.0kb downstream 6822 true chr6: 33775376-33782197 Medicago truncatula
Medtr6g088665 2.0kb downstream 2.0kb downstream 2000 false chr6: 33775376-33777375 Medicago truncatula
Medtr6g088665 5.0kb upstream 5.0kb upstream 9822 true chr6: 33777376-33787197 Medicago truncatula
Medtr6g088665 5.0kb upstream 5.0kb upstream 5000 false chr6: 33782198-33787197 Medicago truncatula
Medtr6g088665 5.0kb downstream 5.0kb downstream 9822 true chr6: 33772376-33782197 Medicago truncatula
Medtr6g088665 5.0kb downstream 5.0kb downstream 5000 false chr6: 33772376-33777375 Medicago truncatula
Medtr6g088665 10.0kb upstream 10.0kb upstream 14822 true chr6: 33777376-33792197 Medicago truncatula
Medtr6g088665 10.0kb upstream 10.0kb upstream 10000 false chr6: 33782198-33792197 Medicago truncatula
Medtr6g088665 10.0kb downstream 10.0kb downstream 14822 true chr6: 33767376-33782197 Medicago truncatula
Medtr6g088665 10.0kb downstream 10.0kb downstream 10000 false chr6: 33767376-33777375 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302067 5265 Fabidae View MSA
124061088 5270 Rosid View MSA
123745959 5271 Pentapetalae View MSA
122787426 5272 Eudicot View MSA
122044176 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121345815 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.236     High High
cufflinks 5.44        
cufflinks 5.491        
cufflinks 7.018        
cufflinks 3.163       Low
cufflinks 4.269        
cufflinks 12.537     High High
cufflinks 5.908        
cufflinks 8.85        

0 Strain