Gene : Medtr6g090515 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR22761:SF8 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 32 HOMOLOG 1-RELATED Description:  charged multivesicular body protein
Genomic Order:  3764 Name:  ? Medtr6g090515
Secondary Identifier:  ? PAC:31105651
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g090515 0.5kb upstream 0.5kb upstream 4743 true chr6: 34402752-34407494 Medicago truncatula
Medtr6g090515 0.5kb upstream 0.5kb upstream 500 false chr6: 34402752-34403251 Medicago truncatula
Medtr6g090515 0.5kb downstream 0.5kb downstream 4743 true chr6: 34403252-34407994 Medicago truncatula
Medtr6g090515 0.5kb downstream 0.5kb downstream 500 false chr6: 34407495-34407994 Medicago truncatula
Medtr6g090515 1.0kb upstream 1.0kb upstream 5243 true chr6: 34402252-34407494 Medicago truncatula
Medtr6g090515 1.0kb upstream 1.0kb upstream 1000 false chr6: 34402252-34403251 Medicago truncatula
Medtr6g090515 1.0kb downstream 1.0kb downstream 5243 true chr6: 34403252-34408494 Medicago truncatula
Medtr6g090515 1.0kb downstream 1.0kb downstream 1000 false chr6: 34407495-34408494 Medicago truncatula
Medtr6g090515 2.0kb upstream 2.0kb upstream 6243 true chr6: 34401252-34407494 Medicago truncatula
Medtr6g090515 2.0kb upstream 2.0kb upstream 2000 false chr6: 34401252-34403251 Medicago truncatula
Medtr6g090515 2.0kb downstream 2.0kb downstream 6243 true chr6: 34403252-34409494 Medicago truncatula
Medtr6g090515 2.0kb downstream 2.0kb downstream 2000 false chr6: 34407495-34409494 Medicago truncatula
Medtr6g090515 5.0kb upstream 5.0kb upstream 9243 true chr6: 34398252-34407494 Medicago truncatula
Medtr6g090515 5.0kb upstream 5.0kb upstream 5000 false chr6: 34398252-34403251 Medicago truncatula
Medtr6g090515 5.0kb downstream 5.0kb downstream 9243 true chr6: 34403252-34412494 Medicago truncatula
Medtr6g090515 5.0kb downstream 5.0kb downstream 5000 false chr6: 34407495-34412494 Medicago truncatula
Medtr6g090515 10.0kb upstream 10.0kb upstream 14243 true chr6: 34393252-34407494 Medicago truncatula
Medtr6g090515 10.0kb upstream 10.0kb upstream 10000 false chr6: 34393252-34403251 Medicago truncatula
Medtr6g090515 10.0kb downstream 10.0kb downstream 14243 true chr6: 34403252-34417494 Medicago truncatula
Medtr6g090515 10.0kb downstream 10.0kb downstream 10000 false chr6: 34407495-34417494 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309390 5265 Fabidae View MSA
124071196 5270 Rosid View MSA
123751251 5271 Pentapetalae View MSA
122786571 5272 Eudicot View MSA
122048548 5273 Angiosperm View MSA
121350329 5274 Embryophyte View MSA
123426511 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.542        
cufflinks 10.141     High  
cufflinks 10.148     High  
cufflinks 8.348        
cufflinks 9.654        
cufflinks 4.741       Low
cufflinks 12.271     High High
cufflinks 8.882        
cufflinks 8.62        

0 Strain