Gene : Medtr6g072080 M. truncatula Mt4.0v1
Defline:  (1 of 3) 6.1.1.16 - Cysteine--tRNA ligase / Cysteinyl-tRNA synthetase Description:  cysteinyl-tRNA synthetase
Genomic Order:  2915 Name:  ? Medtr6g072080
Secondary Identifier:  ? PAC:31101565
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g072080 0.5kb upstream 0.5kb upstream 4676 true chr6: 26711987-26716662 Medicago truncatula
Medtr6g072080 0.5kb upstream 0.5kb upstream 500 false chr6: 26711987-26712486 Medicago truncatula
Medtr6g072080 0.5kb downstream 0.5kb downstream 4676 true chr6: 26712487-26717162 Medicago truncatula
Medtr6g072080 0.5kb downstream 0.5kb downstream 500 false chr6: 26716663-26717162 Medicago truncatula
Medtr6g072080 1.0kb upstream 1.0kb upstream 5176 true chr6: 26711487-26716662 Medicago truncatula
Medtr6g072080 1.0kb upstream 1.0kb upstream 1000 false chr6: 26711487-26712486 Medicago truncatula
Medtr6g072080 1.0kb downstream 1.0kb downstream 5176 true chr6: 26712487-26717662 Medicago truncatula
Medtr6g072080 1.0kb downstream 1.0kb downstream 1000 false chr6: 26716663-26717662 Medicago truncatula
Medtr6g072080 2.0kb upstream 2.0kb upstream 6176 true chr6: 26710487-26716662 Medicago truncatula
Medtr6g072080 2.0kb upstream 2.0kb upstream 2000 false chr6: 26710487-26712486 Medicago truncatula
Medtr6g072080 2.0kb downstream 2.0kb downstream 6176 true chr6: 26712487-26718662 Medicago truncatula
Medtr6g072080 2.0kb downstream 2.0kb downstream 2000 false chr6: 26716663-26718662 Medicago truncatula
Medtr6g072080 5.0kb upstream 5.0kb upstream 9176 true chr6: 26707487-26716662 Medicago truncatula
Medtr6g072080 5.0kb upstream 5.0kb upstream 5000 false chr6: 26707487-26712486 Medicago truncatula
Medtr6g072080 5.0kb downstream 5.0kb downstream 9176 true chr6: 26712487-26721662 Medicago truncatula
Medtr6g072080 5.0kb downstream 5.0kb downstream 5000 false chr6: 26716663-26721662 Medicago truncatula
Medtr6g072080 10.0kb upstream 10.0kb upstream 14176 true chr6: 26702487-26716662 Medicago truncatula
Medtr6g072080 10.0kb upstream 10.0kb upstream 10000 false chr6: 26702487-26712486 Medicago truncatula
Medtr6g072080 10.0kb downstream 10.0kb downstream 14176 true chr6: 26712487-26726662 Medicago truncatula
Medtr6g072080 10.0kb downstream 10.0kb downstream 10000 false chr6: 26716663-26726662 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306399 5265 Fabidae View MSA
124063129 5270 Rosid View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.151       High
cufflinks 0.04     Low  
cufflinks 0.078        
cufflinks 0.031     Low  
cufflinks 0.075        
cufflinks 0.006     Low Low
cufflinks 0.058     Low  
cufflinks 0.045     Low  
cufflinks 0.063     Low  

0 Strain