Gene : Medtr6g075280 M. truncatula Mt4.0v1
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  3017 Name:  ? Medtr6g075280
Secondary Identifier:  ? PAC:31105680
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g075280 0.5kb upstream 0.5kb upstream 3795 true chr6: 27881392-27885186 Medicago truncatula
Medtr6g075280 0.5kb upstream 0.5kb upstream 500 false chr6: 27881392-27881891 Medicago truncatula
Medtr6g075280 0.5kb downstream 0.5kb downstream 3795 true chr6: 27881892-27885686 Medicago truncatula
Medtr6g075280 0.5kb downstream 0.5kb downstream 500 false chr6: 27885187-27885686 Medicago truncatula
Medtr6g075280 1.0kb upstream 1.0kb upstream 4295 true chr6: 27880892-27885186 Medicago truncatula
Medtr6g075280 1.0kb upstream 1.0kb upstream 1000 false chr6: 27880892-27881891 Medicago truncatula
Medtr6g075280 1.0kb downstream 1.0kb downstream 4295 true chr6: 27881892-27886186 Medicago truncatula
Medtr6g075280 1.0kb downstream 1.0kb downstream 1000 false chr6: 27885187-27886186 Medicago truncatula
Medtr6g075280 2.0kb upstream 2.0kb upstream 5295 true chr6: 27879892-27885186 Medicago truncatula
Medtr6g075280 2.0kb upstream 2.0kb upstream 2000 false chr6: 27879892-27881891 Medicago truncatula
Medtr6g075280 2.0kb downstream 2.0kb downstream 5295 true chr6: 27881892-27887186 Medicago truncatula
Medtr6g075280 2.0kb downstream 2.0kb downstream 2000 false chr6: 27885187-27887186 Medicago truncatula
Medtr6g075280 5.0kb upstream 5.0kb upstream 8295 true chr6: 27876892-27885186 Medicago truncatula
Medtr6g075280 5.0kb upstream 5.0kb upstream 5000 false chr6: 27876892-27881891 Medicago truncatula
Medtr6g075280 5.0kb downstream 5.0kb downstream 8295 true chr6: 27881892-27890186 Medicago truncatula
Medtr6g075280 5.0kb downstream 5.0kb downstream 5000 false chr6: 27885187-27890186 Medicago truncatula
Medtr6g075280 10.0kb upstream 10.0kb upstream 13295 true chr6: 27871892-27885186 Medicago truncatula
Medtr6g075280 10.0kb upstream 10.0kb upstream 10000 false chr6: 27871892-27881891 Medicago truncatula
Medtr6g075280 10.0kb downstream 10.0kb downstream 13295 true chr6: 27881892-27895186 Medicago truncatula
Medtr6g075280 10.0kb downstream 10.0kb downstream 10000 false chr6: 27885187-27895186 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299753 5265 Fabidae View MSA
124064804 5270 Rosid View MSA
123740477 5271 Pentapetalae View MSA
122791642 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.399        
cufflinks 1.817        
cufflinks 2.521        
cufflinks 0.563        
cufflinks 2.481        
cufflinks 0.056     Low Low
cufflinks 1.219        
cufflinks 1.826        
cufflinks 1.011        

0 Strain