Gene : Medtr6g053090 M. truncatula Mt4.0v1
Defline:  (1 of 492) PF01535 - PPR repeat (PPR) Description:  PPR containing plant protein
Genomic Order:  2240 Name:  ? Medtr6g053090
Secondary Identifier:  ? PAC:31105378
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g053090 0.5kb upstream 0.5kb upstream 4900 true chr6: 19039236-19044135 Medicago truncatula
Medtr6g053090 0.5kb upstream 0.5kb upstream 500 false chr6: 19039236-19039735 Medicago truncatula
Medtr6g053090 0.5kb downstream 0.5kb downstream 4900 true chr6: 19039736-19044635 Medicago truncatula
Medtr6g053090 0.5kb downstream 0.5kb downstream 500 false chr6: 19044136-19044635 Medicago truncatula
Medtr6g053090 1.0kb upstream 1.0kb upstream 5400 true chr6: 19038736-19044135 Medicago truncatula
Medtr6g053090 1.0kb upstream 1.0kb upstream 1000 false chr6: 19038736-19039735 Medicago truncatula
Medtr6g053090 1.0kb downstream 1.0kb downstream 5400 true chr6: 19039736-19045135 Medicago truncatula
Medtr6g053090 1.0kb downstream 1.0kb downstream 1000 false chr6: 19044136-19045135 Medicago truncatula
Medtr6g053090 2.0kb upstream 2.0kb upstream 6400 true chr6: 19037736-19044135 Medicago truncatula
Medtr6g053090 2.0kb upstream 2.0kb upstream 2000 false chr6: 19037736-19039735 Medicago truncatula
Medtr6g053090 2.0kb downstream 2.0kb downstream 6400 true chr6: 19039736-19046135 Medicago truncatula
Medtr6g053090 2.0kb downstream 2.0kb downstream 2000 false chr6: 19044136-19046135 Medicago truncatula
Medtr6g053090 5.0kb upstream 5.0kb upstream 9400 true chr6: 19034736-19044135 Medicago truncatula
Medtr6g053090 5.0kb upstream 5.0kb upstream 5000 false chr6: 19034736-19039735 Medicago truncatula
Medtr6g053090 5.0kb downstream 5.0kb downstream 9400 true chr6: 19039736-19049135 Medicago truncatula
Medtr6g053090 5.0kb downstream 5.0kb downstream 5000 false chr6: 19044136-19049135 Medicago truncatula
Medtr6g053090 10.0kb upstream 10.0kb upstream 14400 true chr6: 19029736-19044135 Medicago truncatula
Medtr6g053090 10.0kb upstream 10.0kb upstream 10000 false chr6: 19029736-19039735 Medicago truncatula
Medtr6g053090 10.0kb downstream 10.0kb downstream 14400 true chr6: 19039736-19054135 Medicago truncatula
Medtr6g053090 10.0kb downstream 10.0kb downstream 10000 false chr6: 19044136-19054135 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300362 5265 Fabidae View MSA
124068830 5270 Rosid View MSA
123749334 5271 Pentapetalae View MSA
122792381 5272 Eudicot View MSA
122041960 5273 Angiosperm View MSA
121348427 5274 Embryophyte View MSA
123380862 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.218        
cufflinks 4.836        
cufflinks 7.017       High
cufflinks 0.279       Low
cufflinks 7.491       High
cufflinks 0.595        
cufflinks 0.406        
cufflinks 6.169        
cufflinks 0.215       Low

0 Strain