Gene : Medtr6g068960 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR16684 - CENTROMERE PROTEIN C Description:  centromere C-like protein
Genomic Order:  2734 Name:  ? Medtr6g068960
Secondary Identifier:  ? PAC:31103556
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g068960 0.5kb upstream 0.5kb upstream 5209 true chr6: 24784121-24789329 Medicago truncatula
Medtr6g068960 0.5kb upstream 0.5kb upstream 500 false chr6: 24784121-24784620 Medicago truncatula
Medtr6g068960 0.5kb downstream 0.5kb downstream 5209 true chr6: 24784621-24789829 Medicago truncatula
Medtr6g068960 0.5kb downstream 0.5kb downstream 500 false chr6: 24789330-24789829 Medicago truncatula
Medtr6g068960 1.0kb upstream 1.0kb upstream 5709 true chr6: 24783621-24789329 Medicago truncatula
Medtr6g068960 1.0kb upstream 1.0kb upstream 1000 false chr6: 24783621-24784620 Medicago truncatula
Medtr6g068960 1.0kb downstream 1.0kb downstream 5709 true chr6: 24784621-24790329 Medicago truncatula
Medtr6g068960 1.0kb downstream 1.0kb downstream 1000 false chr6: 24789330-24790329 Medicago truncatula
Medtr6g068960 2.0kb upstream 2.0kb upstream 6709 true chr6: 24782621-24789329 Medicago truncatula
Medtr6g068960 2.0kb upstream 2.0kb upstream 2000 false chr6: 24782621-24784620 Medicago truncatula
Medtr6g068960 2.0kb downstream 2.0kb downstream 6709 true chr6: 24784621-24791329 Medicago truncatula
Medtr6g068960 2.0kb downstream 2.0kb downstream 2000 false chr6: 24789330-24791329 Medicago truncatula
Medtr6g068960 5.0kb upstream 5.0kb upstream 9709 true chr6: 24779621-24789329 Medicago truncatula
Medtr6g068960 5.0kb upstream 5.0kb upstream 5000 false chr6: 24779621-24784620 Medicago truncatula
Medtr6g068960 5.0kb downstream 5.0kb downstream 9709 true chr6: 24784621-24794329 Medicago truncatula
Medtr6g068960 5.0kb downstream 5.0kb downstream 5000 false chr6: 24789330-24794329 Medicago truncatula
Medtr6g068960 10.0kb upstream 10.0kb upstream 14709 true chr6: 24774621-24789329 Medicago truncatula
Medtr6g068960 10.0kb upstream 10.0kb upstream 10000 false chr6: 24774621-24784620 Medicago truncatula
Medtr6g068960 10.0kb downstream 10.0kb downstream 14709 true chr6: 24784621-24799329 Medicago truncatula
Medtr6g068960 10.0kb downstream 10.0kb downstream 10000 false chr6: 24789330-24799329 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122265699 5265 Fabidae Singleton cluster - no MSA
124069711 5270 Rosid View MSA
123738687 5271 Pentapetalae View MSA
122788582 5272 Eudicot View MSA
122045185 5273 Angiosperm View MSA
121350045 5274 Embryophyte View MSA
123426660 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.723        
cufflinks 1.56        
cufflinks 1.682        
cufflinks 0.194       Low
cufflinks 2.025        
cufflinks 0.117     Low Low
cufflinks 0.853        
cufflinks 1.201        
cufflinks 0.81        

0 Strain