Gene : Medtr6g033745 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR33149:SF1 - PHOTOSYSTEM II D2 PROTEIN Description:  photosystem II D2 protein, putative
Genomic Order:  1433 Name:  ? Medtr6g033745
Secondary Identifier:  ? PAC:31105318
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g033745 0.5kb upstream 0.5kb upstream 3209 true chr6: 11110576-11113784 Medicago truncatula
Medtr6g033745 0.5kb upstream 0.5kb upstream 500 false chr6: 11113285-11113784 Medicago truncatula
Medtr6g033745 0.5kb downstream 0.5kb downstream 3209 true chr6: 11110076-11113284 Medicago truncatula
Medtr6g033745 0.5kb downstream 0.5kb downstream 500 false chr6: 11110076-11110575 Medicago truncatula
Medtr6g033745 1.0kb upstream 1.0kb upstream 3709 true chr6: 11110576-11114284 Medicago truncatula
Medtr6g033745 1.0kb upstream 1.0kb upstream 1000 false chr6: 11113285-11114284 Medicago truncatula
Medtr6g033745 1.0kb downstream 1.0kb downstream 3709 true chr6: 11109576-11113284 Medicago truncatula
Medtr6g033745 1.0kb downstream 1.0kb downstream 1000 false chr6: 11109576-11110575 Medicago truncatula
Medtr6g033745 2.0kb upstream 2.0kb upstream 4709 true chr6: 11110576-11115284 Medicago truncatula
Medtr6g033745 2.0kb upstream 2.0kb upstream 2000 false chr6: 11113285-11115284 Medicago truncatula
Medtr6g033745 2.0kb downstream 2.0kb downstream 4709 true chr6: 11108576-11113284 Medicago truncatula
Medtr6g033745 2.0kb downstream 2.0kb downstream 2000 false chr6: 11108576-11110575 Medicago truncatula
Medtr6g033745 5.0kb upstream 5.0kb upstream 7709 true chr6: 11110576-11118284 Medicago truncatula
Medtr6g033745 5.0kb upstream 5.0kb upstream 5000 false chr6: 11113285-11118284 Medicago truncatula
Medtr6g033745 5.0kb downstream 5.0kb downstream 7709 true chr6: 11105576-11113284 Medicago truncatula
Medtr6g033745 5.0kb downstream 5.0kb downstream 5000 false chr6: 11105576-11110575 Medicago truncatula
Medtr6g033745 10.0kb upstream 10.0kb upstream 12709 true chr6: 11110576-11123284 Medicago truncatula
Medtr6g033745 10.0kb upstream 10.0kb upstream 10000 false chr6: 11113285-11123284 Medicago truncatula
Medtr6g033745 10.0kb downstream 10.0kb downstream 12709 true chr6: 11100576-11113284 Medicago truncatula
Medtr6g033745 10.0kb downstream 10.0kb downstream 10000 false chr6: 11100576-11110575 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122266232 5265 Fabidae Singleton cluster - no MSA
124007247 5270 Rosid Singleton cluster - no MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain