Gene : Medtr6g033540 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.6.1.9 - Histidinol-phosphate transaminase / Imidazolylacetolphosphate aminotransferase Description:  histidinol-phosphate aminotransferase
Genomic Order:  1410 Name:  ? Medtr6g033540
Secondary Identifier:  ? PAC:31104180
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula HISTSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g033540 0.5kb upstream 0.5kb upstream 10720 true chr6: 10888033-10898752 Medicago truncatula
Medtr6g033540 0.5kb upstream 0.5kb upstream 500 false chr6: 10888033-10888532 Medicago truncatula
Medtr6g033540 0.5kb downstream 0.5kb downstream 10720 true chr6: 10888533-10899252 Medicago truncatula
Medtr6g033540 0.5kb downstream 0.5kb downstream 500 false chr6: 10898753-10899252 Medicago truncatula
Medtr6g033540 1.0kb upstream 1.0kb upstream 11220 true chr6: 10887533-10898752 Medicago truncatula
Medtr6g033540 1.0kb upstream 1.0kb upstream 1000 false chr6: 10887533-10888532 Medicago truncatula
Medtr6g033540 1.0kb downstream 1.0kb downstream 11220 true chr6: 10888533-10899752 Medicago truncatula
Medtr6g033540 1.0kb downstream 1.0kb downstream 1000 false chr6: 10898753-10899752 Medicago truncatula
Medtr6g033540 2.0kb upstream 2.0kb upstream 12220 true chr6: 10886533-10898752 Medicago truncatula
Medtr6g033540 2.0kb upstream 2.0kb upstream 2000 false chr6: 10886533-10888532 Medicago truncatula
Medtr6g033540 2.0kb downstream 2.0kb downstream 12220 true chr6: 10888533-10900752 Medicago truncatula
Medtr6g033540 2.0kb downstream 2.0kb downstream 2000 false chr6: 10898753-10900752 Medicago truncatula
Medtr6g033540 5.0kb upstream 5.0kb upstream 15220 true chr6: 10883533-10898752 Medicago truncatula
Medtr6g033540 5.0kb upstream 5.0kb upstream 5000 false chr6: 10883533-10888532 Medicago truncatula
Medtr6g033540 5.0kb downstream 5.0kb downstream 15220 true chr6: 10888533-10903752 Medicago truncatula
Medtr6g033540 5.0kb downstream 5.0kb downstream 5000 false chr6: 10898753-10903752 Medicago truncatula
Medtr6g033540 10.0kb upstream 10.0kb upstream 20220 true chr6: 10878533-10898752 Medicago truncatula
Medtr6g033540 10.0kb upstream 10.0kb upstream 10000 false chr6: 10878533-10888532 Medicago truncatula
Medtr6g033540 10.0kb downstream 10.0kb downstream 20220 true chr6: 10888533-10908752 Medicago truncatula
Medtr6g033540 10.0kb downstream 10.0kb downstream 10000 false chr6: 10898753-10908752 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300185 5265 Fabidae View MSA
124062361 5270 Rosid View MSA
123738410 5271 Pentapetalae View MSA
122789923 5272 Eudicot View MSA
122043706 5273 Angiosperm View MSA
121344225 5274 Embryophyte View MSA
123423969 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.51        
cufflinks 0.837        
cufflinks 0.652        
cufflinks 0.532        
cufflinks 0.905       High
cufflinks 0.273       Low
cufflinks 0.595        
cufflinks 0.702        
cufflinks 0.576        

0 Strain