Gene : Medtr7g092500 M. truncatula Mt4.0v1
Defline:  (1 of 3) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Description:  tRNA-splicing endonuclease subunit Sen2
Genomic Order:  4437 Name:  ? Medtr7g092500
Secondary Identifier:  ? PAC:31079276
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6689 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g092500 0.5kb upstream 0.5kb upstream 2188 true chr7: 36662946-36665133 Medicago truncatula
Medtr7g092500 0.5kb upstream 0.5kb upstream 500 false chr7: 36664634-36665133 Medicago truncatula
Medtr7g092500 0.5kb downstream 0.5kb downstream 2188 true chr7: 36662446-36664633 Medicago truncatula
Medtr7g092500 0.5kb downstream 0.5kb downstream 500 false chr7: 36662446-36662945 Medicago truncatula
Medtr7g092500 1.0kb upstream 1.0kb upstream 2688 true chr7: 36662946-36665633 Medicago truncatula
Medtr7g092500 1.0kb upstream 1.0kb upstream 1000 false chr7: 36664634-36665633 Medicago truncatula
Medtr7g092500 1.0kb downstream 1.0kb downstream 2688 true chr7: 36661946-36664633 Medicago truncatula
Medtr7g092500 1.0kb downstream 1.0kb downstream 1000 false chr7: 36661946-36662945 Medicago truncatula
Medtr7g092500 2.0kb upstream 2.0kb upstream 3688 true chr7: 36662946-36666633 Medicago truncatula
Medtr7g092500 2.0kb upstream 2.0kb upstream 2000 false chr7: 36664634-36666633 Medicago truncatula
Medtr7g092500 2.0kb downstream 2.0kb downstream 3688 true chr7: 36660946-36664633 Medicago truncatula
Medtr7g092500 2.0kb downstream 2.0kb downstream 2000 false chr7: 36660946-36662945 Medicago truncatula
Medtr7g092500 5.0kb upstream 5.0kb upstream 6688 true chr7: 36662946-36669633 Medicago truncatula
Medtr7g092500 5.0kb upstream 5.0kb upstream 5000 false chr7: 36664634-36669633 Medicago truncatula
Medtr7g092500 5.0kb downstream 5.0kb downstream 6688 true chr7: 36657946-36664633 Medicago truncatula
Medtr7g092500 5.0kb downstream 5.0kb downstream 5000 false chr7: 36657946-36662945 Medicago truncatula
Medtr7g092500 10.0kb upstream 10.0kb upstream 11688 true chr7: 36662946-36674633 Medicago truncatula
Medtr7g092500 10.0kb upstream 10.0kb upstream 10000 false chr7: 36664634-36674633 Medicago truncatula
Medtr7g092500 10.0kb downstream 10.0kb downstream 11688 true chr7: 36652946-36664633 Medicago truncatula
Medtr7g092500 10.0kb downstream 10.0kb downstream 10000 false chr7: 36652946-36662945 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122306771 5265 Fabidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.536        
cufflinks 1.201        
cufflinks 2.166        
cufflinks 1.71        
cufflinks 1.953        
cufflinks 0.392       Low
cufflinks 2.021        
cufflinks 1.615        
cufflinks 1.548        

0 Strain