Gene : Medtr7g079020 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Description:  YegS/Rv2252/BmrU family lipid kinase
Genomic Order:  3491 Name:  ? Medtr7g079020
Secondary Identifier:  ? PAC:31081706
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7039 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g079020 0.5kb upstream 0.5kb upstream 4087 true chr7: 30012331-30016417 Medicago truncatula
Medtr7g079020 0.5kb upstream 0.5kb upstream 500 false chr7: 30012331-30012830 Medicago truncatula
Medtr7g079020 0.5kb downstream 0.5kb downstream 4087 true chr7: 30012831-30016917 Medicago truncatula
Medtr7g079020 0.5kb downstream 0.5kb downstream 500 false chr7: 30016418-30016917 Medicago truncatula
Medtr7g079020 1.0kb upstream 1.0kb upstream 4587 true chr7: 30011831-30016417 Medicago truncatula
Medtr7g079020 1.0kb upstream 1.0kb upstream 1000 false chr7: 30011831-30012830 Medicago truncatula
Medtr7g079020 1.0kb downstream 1.0kb downstream 4587 true chr7: 30012831-30017417 Medicago truncatula
Medtr7g079020 1.0kb downstream 1.0kb downstream 1000 false chr7: 30016418-30017417 Medicago truncatula
Medtr7g079020 2.0kb upstream 2.0kb upstream 5587 true chr7: 30010831-30016417 Medicago truncatula
Medtr7g079020 2.0kb upstream 2.0kb upstream 2000 false chr7: 30010831-30012830 Medicago truncatula
Medtr7g079020 2.0kb downstream 2.0kb downstream 5587 true chr7: 30012831-30018417 Medicago truncatula
Medtr7g079020 2.0kb downstream 2.0kb downstream 2000 false chr7: 30016418-30018417 Medicago truncatula
Medtr7g079020 5.0kb upstream 5.0kb upstream 8587 true chr7: 30007831-30016417 Medicago truncatula
Medtr7g079020 5.0kb upstream 5.0kb upstream 5000 false chr7: 30007831-30012830 Medicago truncatula
Medtr7g079020 5.0kb downstream 5.0kb downstream 8587 true chr7: 30012831-30021417 Medicago truncatula
Medtr7g079020 5.0kb downstream 5.0kb downstream 5000 false chr7: 30016418-30021417 Medicago truncatula
Medtr7g079020 10.0kb upstream 10.0kb upstream 13587 true chr7: 30002831-30016417 Medicago truncatula
Medtr7g079020 10.0kb upstream 10.0kb upstream 10000 false chr7: 30002831-30012830 Medicago truncatula
Medtr7g079020 10.0kb downstream 10.0kb downstream 13587 true chr7: 30012831-30026417 Medicago truncatula
Medtr7g079020 10.0kb downstream 10.0kb downstream 10000 false chr7: 30016418-30026417 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303667 5265 Fabidae View MSA
124062992 5270 Rosid View MSA
123747106 5271 Pentapetalae View MSA
122789016 5272 Eudicot View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.619        
cufflinks 2.325        
cufflinks 5.189       High
cufflinks 1.648       Low
cufflinks 2.46        
cufflinks 1.172       Low
cufflinks 3.31        
cufflinks 3.877        
cufflinks 2.64        

0 Strain