Gene : Medtr6g092170 M. truncatula Mt4.0v1
Defline:  (1 of 12) PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  PPR containing plant-like protein
Genomic Order:  3813 Name:  ? Medtr6g092170
Secondary Identifier:  ? PAC:31104436
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g092170 0.5kb upstream 0.5kb upstream 1986 true chr6: 34742089-34744074 Medicago truncatula
Medtr6g092170 0.5kb upstream 0.5kb upstream 500 false chr6: 34743575-34744074 Medicago truncatula
Medtr6g092170 0.5kb downstream 0.5kb downstream 1986 true chr6: 34741589-34743574 Medicago truncatula
Medtr6g092170 0.5kb downstream 0.5kb downstream 500 false chr6: 34741589-34742088 Medicago truncatula
Medtr6g092170 1.0kb upstream 1.0kb upstream 2486 true chr6: 34742089-34744574 Medicago truncatula
Medtr6g092170 1.0kb upstream 1.0kb upstream 1000 false chr6: 34743575-34744574 Medicago truncatula
Medtr6g092170 1.0kb downstream 1.0kb downstream 2486 true chr6: 34741089-34743574 Medicago truncatula
Medtr6g092170 1.0kb downstream 1.0kb downstream 1000 false chr6: 34741089-34742088 Medicago truncatula
Medtr6g092170 2.0kb upstream 2.0kb upstream 3486 true chr6: 34742089-34745574 Medicago truncatula
Medtr6g092170 2.0kb upstream 2.0kb upstream 2000 false chr6: 34743575-34745574 Medicago truncatula
Medtr6g092170 2.0kb downstream 2.0kb downstream 3486 true chr6: 34740089-34743574 Medicago truncatula
Medtr6g092170 2.0kb downstream 2.0kb downstream 2000 false chr6: 34740089-34742088 Medicago truncatula
Medtr6g092170 5.0kb upstream 5.0kb upstream 6486 true chr6: 34742089-34748574 Medicago truncatula
Medtr6g092170 5.0kb upstream 5.0kb upstream 5000 false chr6: 34743575-34748574 Medicago truncatula
Medtr6g092170 5.0kb downstream 5.0kb downstream 6486 true chr6: 34737089-34743574 Medicago truncatula
Medtr6g092170 5.0kb downstream 5.0kb downstream 5000 false chr6: 34737089-34742088 Medicago truncatula
Medtr6g092170 10.0kb upstream 10.0kb upstream 11486 true chr6: 34742089-34753574 Medicago truncatula
Medtr6g092170 10.0kb upstream 10.0kb upstream 10000 false chr6: 34743575-34753574 Medicago truncatula
Medtr6g092170 10.0kb downstream 10.0kb downstream 11486 true chr6: 34732089-34743574 Medicago truncatula
Medtr6g092170 10.0kb downstream 10.0kb downstream 10000 false chr6: 34732089-34742088 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299810 5265 Fabidae View MSA
124072182 5270 Rosid View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.003        
cufflinks 2.487        
cufflinks 3.824        
cufflinks 0.509        
cufflinks 5.228        
cufflinks 0.082     Low Low
cufflinks 1.838        
cufflinks 3.126        
cufflinks 1.709        

0 Strain