Gene : Medtr7g017700 M. truncatula Mt4.0v1
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  PPR containing plant-like protein
Genomic Order:  693 Name:  ? Medtr7g017700
Secondary Identifier:  ? PAC:31083647
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g017700 0.5kb upstream 0.5kb upstream 3608 true chr7: 5669078-5672685 Medicago truncatula
Medtr7g017700 0.5kb upstream 0.5kb upstream 500 false chr7: 5672186-5672685 Medicago truncatula
Medtr7g017700 0.5kb downstream 0.5kb downstream 3608 true chr7: 5668578-5672185 Medicago truncatula
Medtr7g017700 0.5kb downstream 0.5kb downstream 500 false chr7: 5668578-5669077 Medicago truncatula
Medtr7g017700 1.0kb upstream 1.0kb upstream 4108 true chr7: 5669078-5673185 Medicago truncatula
Medtr7g017700 1.0kb upstream 1.0kb upstream 1000 false chr7: 5672186-5673185 Medicago truncatula
Medtr7g017700 1.0kb downstream 1.0kb downstream 4108 true chr7: 5668078-5672185 Medicago truncatula
Medtr7g017700 1.0kb downstream 1.0kb downstream 1000 false chr7: 5668078-5669077 Medicago truncatula
Medtr7g017700 2.0kb upstream 2.0kb upstream 5108 true chr7: 5669078-5674185 Medicago truncatula
Medtr7g017700 2.0kb upstream 2.0kb upstream 2000 false chr7: 5672186-5674185 Medicago truncatula
Medtr7g017700 2.0kb downstream 2.0kb downstream 5108 true chr7: 5667078-5672185 Medicago truncatula
Medtr7g017700 2.0kb downstream 2.0kb downstream 2000 false chr7: 5667078-5669077 Medicago truncatula
Medtr7g017700 5.0kb upstream 5.0kb upstream 8108 true chr7: 5669078-5677185 Medicago truncatula
Medtr7g017700 5.0kb upstream 5.0kb upstream 5000 false chr7: 5672186-5677185 Medicago truncatula
Medtr7g017700 5.0kb downstream 5.0kb downstream 8108 true chr7: 5664078-5672185 Medicago truncatula
Medtr7g017700 5.0kb downstream 5.0kb downstream 5000 false chr7: 5664078-5669077 Medicago truncatula
Medtr7g017700 10.0kb upstream 10.0kb upstream 13108 true chr7: 5669078-5682185 Medicago truncatula
Medtr7g017700 10.0kb upstream 10.0kb upstream 10000 false chr7: 5672186-5682185 Medicago truncatula
Medtr7g017700 10.0kb downstream 10.0kb downstream 13108 true chr7: 5659078-5672185 Medicago truncatula
Medtr7g017700 10.0kb downstream 10.0kb downstream 10000 false chr7: 5659078-5669077 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303266 5265 Fabidae View MSA
124063770 5270 Rosid View MSA
123736958 5271 Pentapetalae View MSA
122790433 5272 Eudicot View MSA
122047420 5273 Angiosperm View MSA
121310738 5274 Embryophyte View MSA
123348150 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.006     Low  
cufflinks 0.009     Low  
cufflinks 0.005     Low  
cufflinks 0.008     Low  
cufflinks 0.016     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low Low
cufflinks 0.009     Low  
cufflinks 0.01     Low  

0 Strain