Gene : Medtr7g021750 M. truncatula Mt4.0v1
Defline:  (1 of 14) PF00124 - Photosynthetic reaction centre protein (Photo_RC) Description:  photosystem II Q(B) protein
Genomic Order:  828 Name:  ? Medtr7g021750
Secondary Identifier:  ? PAC:31081680
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-101 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g021750 0.5kb upstream 0.5kb upstream 1616 true chr7: 6941811-6943426 Medicago truncatula
Medtr7g021750 0.5kb upstream 0.5kb upstream 500 false chr7: 6942927-6943426 Medicago truncatula
Medtr7g021750 0.5kb downstream 0.5kb downstream 1616 true chr7: 6941311-6942926 Medicago truncatula
Medtr7g021750 0.5kb downstream 0.5kb downstream 500 false chr7: 6941311-6941810 Medicago truncatula
Medtr7g021750 1.0kb upstream 1.0kb upstream 2116 true chr7: 6941811-6943926 Medicago truncatula
Medtr7g021750 1.0kb upstream 1.0kb upstream 1000 false chr7: 6942927-6943926 Medicago truncatula
Medtr7g021750 1.0kb downstream 1.0kb downstream 2116 true chr7: 6940811-6942926 Medicago truncatula
Medtr7g021750 1.0kb downstream 1.0kb downstream 1000 false chr7: 6940811-6941810 Medicago truncatula
Medtr7g021750 2.0kb upstream 2.0kb upstream 3116 true chr7: 6941811-6944926 Medicago truncatula
Medtr7g021750 2.0kb upstream 2.0kb upstream 2000 false chr7: 6942927-6944926 Medicago truncatula
Medtr7g021750 2.0kb downstream 2.0kb downstream 3116 true chr7: 6939811-6942926 Medicago truncatula
Medtr7g021750 2.0kb downstream 2.0kb downstream 2000 false chr7: 6939811-6941810 Medicago truncatula
Medtr7g021750 5.0kb upstream 5.0kb upstream 6116 true chr7: 6941811-6947926 Medicago truncatula
Medtr7g021750 5.0kb upstream 5.0kb upstream 5000 false chr7: 6942927-6947926 Medicago truncatula
Medtr7g021750 5.0kb downstream 5.0kb downstream 6116 true chr7: 6936811-6942926 Medicago truncatula
Medtr7g021750 5.0kb downstream 5.0kb downstream 5000 false chr7: 6936811-6941810 Medicago truncatula
Medtr7g021750 10.0kb upstream 10.0kb upstream 11116 true chr7: 6941811-6952926 Medicago truncatula
Medtr7g021750 10.0kb upstream 10.0kb upstream 10000 false chr7: 6942927-6952926 Medicago truncatula
Medtr7g021750 10.0kb downstream 10.0kb downstream 11116 true chr7: 6931811-6942926 Medicago truncatula
Medtr7g021750 10.0kb downstream 10.0kb downstream 10000 false chr7: 6931811-6941810 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121629245 5273 Angiosperm Singleton cluster - no MSA
122267567 5265 Fabidae Singleton cluster - no MSA
124008500 5270 Rosid Singleton cluster - no MSA
123582494 5271 Pentapetalae Singleton cluster - no MSA
122617198 5272 Eudicot Singleton cluster - no MSA
120901349 5274 Embryophyte Singleton cluster - no MSA
122942004 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.017     Low Low
cufflinks 1.712        
cufflinks 1.871        
cufflinks 0.085        
cufflinks 2.358        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.908        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain