Gene : Medtr7g023780 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF13041//PF13812//PF14432 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  editing factor 22
Genomic Order:  936 Name:  ? Medtr7g023780
Secondary Identifier:  ? PAC:31084323
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g023780 0.5kb upstream 0.5kb upstream 4278 true chr7: 7787040-7791317 Medicago truncatula
Medtr7g023780 0.5kb upstream 0.5kb upstream 500 false chr7: 7790818-7791317 Medicago truncatula
Medtr7g023780 0.5kb downstream 0.5kb downstream 4278 true chr7: 7786540-7790817 Medicago truncatula
Medtr7g023780 0.5kb downstream 0.5kb downstream 500 false chr7: 7786540-7787039 Medicago truncatula
Medtr7g023780 1.0kb upstream 1.0kb upstream 4778 true chr7: 7787040-7791817 Medicago truncatula
Medtr7g023780 1.0kb upstream 1.0kb upstream 1000 false chr7: 7790818-7791817 Medicago truncatula
Medtr7g023780 1.0kb downstream 1.0kb downstream 4778 true chr7: 7786040-7790817 Medicago truncatula
Medtr7g023780 1.0kb downstream 1.0kb downstream 1000 false chr7: 7786040-7787039 Medicago truncatula
Medtr7g023780 2.0kb upstream 2.0kb upstream 5778 true chr7: 7787040-7792817 Medicago truncatula
Medtr7g023780 2.0kb upstream 2.0kb upstream 2000 false chr7: 7790818-7792817 Medicago truncatula
Medtr7g023780 2.0kb downstream 2.0kb downstream 5778 true chr7: 7785040-7790817 Medicago truncatula
Medtr7g023780 2.0kb downstream 2.0kb downstream 2000 false chr7: 7785040-7787039 Medicago truncatula
Medtr7g023780 5.0kb upstream 5.0kb upstream 8778 true chr7: 7787040-7795817 Medicago truncatula
Medtr7g023780 5.0kb upstream 5.0kb upstream 5000 false chr7: 7790818-7795817 Medicago truncatula
Medtr7g023780 5.0kb downstream 5.0kb downstream 8778 true chr7: 7782040-7790817 Medicago truncatula
Medtr7g023780 5.0kb downstream 5.0kb downstream 5000 false chr7: 7782040-7787039 Medicago truncatula
Medtr7g023780 10.0kb upstream 10.0kb upstream 13778 true chr7: 7787040-7800817 Medicago truncatula
Medtr7g023780 10.0kb upstream 10.0kb upstream 10000 false chr7: 7790818-7800817 Medicago truncatula
Medtr7g023780 10.0kb downstream 10.0kb downstream 13778 true chr7: 7777040-7790817 Medicago truncatula
Medtr7g023780 10.0kb downstream 10.0kb downstream 10000 false chr7: 7777040-7787039 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308560 5265 Fabidae View MSA
124063549 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.169        
cufflinks 0.118        
cufflinks 0.142        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.349       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.123        
cufflinks 0.175        
cufflinks 0.027     Low Low

0 Strain