Gene : Medtr7g417750 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Description:  allene oxide cyclase
Genomic Order:  695 Name:  ? Medtr7g417750
Secondary Identifier:  ? PAC:31079660
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-735 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g417750 0.5kb upstream 0.5kb upstream 2038 true chr7: 5689556-5691593 Medicago truncatula
Medtr7g417750 0.5kb upstream 0.5kb upstream 500 false chr7: 5691094-5691593 Medicago truncatula
Medtr7g417750 0.5kb downstream 0.5kb downstream 2038 true chr7: 5689056-5691093 Medicago truncatula
Medtr7g417750 0.5kb downstream 0.5kb downstream 500 false chr7: 5689056-5689555 Medicago truncatula
Medtr7g417750 1.0kb upstream 1.0kb upstream 2538 true chr7: 5689556-5692093 Medicago truncatula
Medtr7g417750 1.0kb upstream 1.0kb upstream 1000 false chr7: 5691094-5692093 Medicago truncatula
Medtr7g417750 1.0kb downstream 1.0kb downstream 2538 true chr7: 5688556-5691093 Medicago truncatula
Medtr7g417750 1.0kb downstream 1.0kb downstream 1000 false chr7: 5688556-5689555 Medicago truncatula
Medtr7g417750 2.0kb upstream 2.0kb upstream 3538 true chr7: 5689556-5693093 Medicago truncatula
Medtr7g417750 2.0kb upstream 2.0kb upstream 2000 false chr7: 5691094-5693093 Medicago truncatula
Medtr7g417750 2.0kb downstream 2.0kb downstream 3538 true chr7: 5687556-5691093 Medicago truncatula
Medtr7g417750 2.0kb downstream 2.0kb downstream 2000 false chr7: 5687556-5689555 Medicago truncatula
Medtr7g417750 5.0kb upstream 5.0kb upstream 6538 true chr7: 5689556-5696093 Medicago truncatula
Medtr7g417750 5.0kb upstream 5.0kb upstream 5000 false chr7: 5691094-5696093 Medicago truncatula
Medtr7g417750 5.0kb downstream 5.0kb downstream 6538 true chr7: 5684556-5691093 Medicago truncatula
Medtr7g417750 5.0kb downstream 5.0kb downstream 5000 false chr7: 5684556-5689555 Medicago truncatula
Medtr7g417750 10.0kb upstream 10.0kb upstream 11538 true chr7: 5689556-5701093 Medicago truncatula
Medtr7g417750 10.0kb upstream 10.0kb upstream 10000 false chr7: 5691094-5701093 Medicago truncatula
Medtr7g417750 10.0kb downstream 10.0kb downstream 11538 true chr7: 5679556-5691093 Medicago truncatula
Medtr7g417750 10.0kb downstream 10.0kb downstream 10000 false chr7: 5679556-5689555 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313475 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.716       Low
cufflinks 80.906     High  
cufflinks 5.228       Low
cufflinks 22.58     High  
cufflinks 22.958     High  
cufflinks 8.263        
cufflinks 44.235     High  
cufflinks 46.036     High  
cufflinks 118.38     High High

0 Strain