Gene : Medtr7g115180 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR33162:SF1 - SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC Description:  twin arginine translocase
Genomic Order:  5980 Name:  ? Medtr7g115180
Secondary Identifier:  ? PAC:31082608
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g115180 0.5kb upstream 0.5kb upstream 2760 true chr7: 47558665-47561424 Medicago truncatula
Medtr7g115180 0.5kb upstream 0.5kb upstream 500 false chr7: 47558665-47559164 Medicago truncatula
Medtr7g115180 0.5kb downstream 0.5kb downstream 2760 true chr7: 47559165-47561924 Medicago truncatula
Medtr7g115180 0.5kb downstream 0.5kb downstream 500 false chr7: 47561425-47561924 Medicago truncatula
Medtr7g115180 1.0kb upstream 1.0kb upstream 3260 true chr7: 47558165-47561424 Medicago truncatula
Medtr7g115180 1.0kb upstream 1.0kb upstream 1000 false chr7: 47558165-47559164 Medicago truncatula
Medtr7g115180 1.0kb downstream 1.0kb downstream 3260 true chr7: 47559165-47562424 Medicago truncatula
Medtr7g115180 1.0kb downstream 1.0kb downstream 1000 false chr7: 47561425-47562424 Medicago truncatula
Medtr7g115180 2.0kb upstream 2.0kb upstream 4260 true chr7: 47557165-47561424 Medicago truncatula
Medtr7g115180 2.0kb upstream 2.0kb upstream 2000 false chr7: 47557165-47559164 Medicago truncatula
Medtr7g115180 2.0kb downstream 2.0kb downstream 4260 true chr7: 47559165-47563424 Medicago truncatula
Medtr7g115180 2.0kb downstream 2.0kb downstream 2000 false chr7: 47561425-47563424 Medicago truncatula
Medtr7g115180 5.0kb upstream 5.0kb upstream 7260 true chr7: 47554165-47561424 Medicago truncatula
Medtr7g115180 5.0kb upstream 5.0kb upstream 5000 false chr7: 47554165-47559164 Medicago truncatula
Medtr7g115180 5.0kb downstream 5.0kb downstream 7260 true chr7: 47559165-47566424 Medicago truncatula
Medtr7g115180 5.0kb downstream 5.0kb downstream 5000 false chr7: 47561425-47566424 Medicago truncatula
Medtr7g115180 10.0kb upstream 10.0kb upstream 12260 true chr7: 47549165-47561424 Medicago truncatula
Medtr7g115180 10.0kb upstream 10.0kb upstream 10000 false chr7: 47549165-47559164 Medicago truncatula
Medtr7g115180 10.0kb downstream 10.0kb downstream 12260 true chr7: 47559165-47571424 Medicago truncatula
Medtr7g115180 10.0kb downstream 10.0kb downstream 10000 false chr7: 47561425-47571424 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311310 5265 Fabidae View MSA
124067421 5270 Rosid View MSA
123742518 5271 Pentapetalae View MSA
122797436 5272 Eudicot View MSA
122042839 5273 Angiosperm View MSA
123429010 5275 Viridiplantae View MSA
121350142 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.93       Low
cufflinks 6.467        
cufflinks 9.803       High
cufflinks 2.762        
cufflinks 9.102       High
cufflinks 2.137        
cufflinks 3.328        
cufflinks 8.152        
cufflinks 1.923       Low

0 Strain