Gene : Medtr7g116600 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23315//PTHR23315:SF80 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING Description:  plant U-box protein
Genomic Order:  6060 Name:  ? Medtr7g116600
Secondary Identifier:  ? PAC:31084510
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g116600 0.5kb upstream 0.5kb upstream 3190 true chr7: 48138777-48141966 Medicago truncatula
Medtr7g116600 0.5kb upstream 0.5kb upstream 500 false chr7: 48138777-48139276 Medicago truncatula
Medtr7g116600 0.5kb downstream 0.5kb downstream 3190 true chr7: 48139277-48142466 Medicago truncatula
Medtr7g116600 0.5kb downstream 0.5kb downstream 500 false chr7: 48141967-48142466 Medicago truncatula
Medtr7g116600 1.0kb upstream 1.0kb upstream 3690 true chr7: 48138277-48141966 Medicago truncatula
Medtr7g116600 1.0kb upstream 1.0kb upstream 1000 false chr7: 48138277-48139276 Medicago truncatula
Medtr7g116600 1.0kb downstream 1.0kb downstream 3690 true chr7: 48139277-48142966 Medicago truncatula
Medtr7g116600 1.0kb downstream 1.0kb downstream 1000 false chr7: 48141967-48142966 Medicago truncatula
Medtr7g116600 2.0kb upstream 2.0kb upstream 4690 true chr7: 48137277-48141966 Medicago truncatula
Medtr7g116600 2.0kb upstream 2.0kb upstream 2000 false chr7: 48137277-48139276 Medicago truncatula
Medtr7g116600 2.0kb downstream 2.0kb downstream 4690 true chr7: 48139277-48143966 Medicago truncatula
Medtr7g116600 2.0kb downstream 2.0kb downstream 2000 false chr7: 48141967-48143966 Medicago truncatula
Medtr7g116600 5.0kb upstream 5.0kb upstream 7690 true chr7: 48134277-48141966 Medicago truncatula
Medtr7g116600 5.0kb upstream 5.0kb upstream 5000 false chr7: 48134277-48139276 Medicago truncatula
Medtr7g116600 5.0kb downstream 5.0kb downstream 7690 true chr7: 48139277-48146966 Medicago truncatula
Medtr7g116600 5.0kb downstream 5.0kb downstream 5000 false chr7: 48141967-48146966 Medicago truncatula
Medtr7g116600 10.0kb upstream 10.0kb upstream 12690 true chr7: 48129277-48141966 Medicago truncatula
Medtr7g116600 10.0kb upstream 10.0kb upstream 10000 false chr7: 48129277-48139276 Medicago truncatula
Medtr7g116600 10.0kb downstream 10.0kb downstream 12690 true chr7: 48139277-48151966 Medicago truncatula
Medtr7g116600 10.0kb downstream 10.0kb downstream 10000 false chr7: 48141967-48151966 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029179 5273 Angiosperm View MSA
122301536 5265 Fabidae View MSA
124071680 5270 Rosid View MSA
123745896 5271 Pentapetalae View MSA
122785914 5272 Eudicot View MSA
121350406 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.528     High High
cufflinks 3.745        
cufflinks 4.231        
cufflinks 2.421        
cufflinks 3.079        
cufflinks 2.006       Low
cufflinks 5.516        
cufflinks 2.42        
cufflinks 7.193       High

0 Strain