Gene : Medtr7g110660 M. truncatula Mt4.0v1
Defline:  (1 of 6) 6.1.1.15 - Proline--tRNA ligase / Prolyl-tRNA synthetase Description:  prolyl-tRNA synthetase family protein
Genomic Order:  5652 Name:  ? Medtr7g110660
Secondary Identifier:  ? PAC:31080764
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g110660 0.5kb upstream 0.5kb upstream 6397 true chr7: 45350861-45357257 Medicago truncatula
Medtr7g110660 0.5kb upstream 0.5kb upstream 500 false chr7: 45350861-45351360 Medicago truncatula
Medtr7g110660 0.5kb downstream 0.5kb downstream 6397 true chr7: 45351361-45357757 Medicago truncatula
Medtr7g110660 0.5kb downstream 0.5kb downstream 500 false chr7: 45357258-45357757 Medicago truncatula
Medtr7g110660 1.0kb upstream 1.0kb upstream 6897 true chr7: 45350361-45357257 Medicago truncatula
Medtr7g110660 1.0kb upstream 1.0kb upstream 1000 false chr7: 45350361-45351360 Medicago truncatula
Medtr7g110660 1.0kb downstream 1.0kb downstream 6897 true chr7: 45351361-45358257 Medicago truncatula
Medtr7g110660 1.0kb downstream 1.0kb downstream 1000 false chr7: 45357258-45358257 Medicago truncatula
Medtr7g110660 2.0kb upstream 2.0kb upstream 7897 true chr7: 45349361-45357257 Medicago truncatula
Medtr7g110660 2.0kb upstream 2.0kb upstream 2000 false chr7: 45349361-45351360 Medicago truncatula
Medtr7g110660 2.0kb downstream 2.0kb downstream 7897 true chr7: 45351361-45359257 Medicago truncatula
Medtr7g110660 2.0kb downstream 2.0kb downstream 2000 false chr7: 45357258-45359257 Medicago truncatula
Medtr7g110660 5.0kb upstream 5.0kb upstream 10897 true chr7: 45346361-45357257 Medicago truncatula
Medtr7g110660 5.0kb upstream 5.0kb upstream 5000 false chr7: 45346361-45351360 Medicago truncatula
Medtr7g110660 5.0kb downstream 5.0kb downstream 10897 true chr7: 45351361-45362257 Medicago truncatula
Medtr7g110660 5.0kb downstream 5.0kb downstream 5000 false chr7: 45357258-45362257 Medicago truncatula
Medtr7g110660 10.0kb upstream 10.0kb upstream 15897 true chr7: 45341361-45357257 Medicago truncatula
Medtr7g110660 10.0kb upstream 10.0kb upstream 10000 false chr7: 45341361-45351360 Medicago truncatula
Medtr7g110660 10.0kb downstream 10.0kb downstream 15897 true chr7: 45351361-45367257 Medicago truncatula
Medtr7g110660 10.0kb downstream 10.0kb downstream 10000 false chr7: 45357258-45367257 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308357 5265 Fabidae View MSA
124064223 5270 Rosid View MSA
123739091 5271 Pentapetalae View MSA
122787738 5272 Eudicot View MSA
122046547 5273 Angiosperm View MSA
121346675 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.485        
cufflinks 10.996     High  
cufflinks 12.745     High  
cufflinks 7.528        
cufflinks 15.267     High  
cufflinks 3.573       Low
cufflinks 11.732     High  
cufflinks 11.757     High  
cufflinks 14.391     High  

0 Strain