Gene : Medtr7g107270 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR14969:SF3 - DIHYDROSPHINGOSINE 1-PHOSPHATE PHOSPHATASE LCB3-RELATED Description:  phosphatidic acid phosphatase (PAP2) family protein
Genomic Order:  5419 Name:  ? Medtr7g107270
Secondary Identifier:  ? PAC:31084295
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRIGLSYN-PWY Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr7g107270 0.5kb upstream 0.5kb upstream 3966 true chr7: 43755300-43759265 Medicago truncatula
Medtr7g107270 0.5kb upstream 0.5kb upstream 500 false chr7: 43755300-43755799 Medicago truncatula
Medtr7g107270 0.5kb downstream 0.5kb downstream 3966 true chr7: 43755800-43759765 Medicago truncatula
Medtr7g107270 0.5kb downstream 0.5kb downstream 500 false chr7: 43759266-43759765 Medicago truncatula
Medtr7g107270 1.0kb upstream 1.0kb upstream 4466 true chr7: 43754800-43759265 Medicago truncatula
Medtr7g107270 1.0kb upstream 1.0kb upstream 1000 false chr7: 43754800-43755799 Medicago truncatula
Medtr7g107270 1.0kb downstream 1.0kb downstream 4466 true chr7: 43755800-43760265 Medicago truncatula
Medtr7g107270 1.0kb downstream 1.0kb downstream 1000 false chr7: 43759266-43760265 Medicago truncatula
Medtr7g107270 2.0kb upstream 2.0kb upstream 5466 true chr7: 43753800-43759265 Medicago truncatula
Medtr7g107270 2.0kb upstream 2.0kb upstream 2000 false chr7: 43753800-43755799 Medicago truncatula
Medtr7g107270 2.0kb downstream 2.0kb downstream 5466 true chr7: 43755800-43761265 Medicago truncatula
Medtr7g107270 2.0kb downstream 2.0kb downstream 2000 false chr7: 43759266-43761265 Medicago truncatula
Medtr7g107270 5.0kb upstream 5.0kb upstream 8466 true chr7: 43750800-43759265 Medicago truncatula
Medtr7g107270 5.0kb upstream 5.0kb upstream 5000 false chr7: 43750800-43755799 Medicago truncatula
Medtr7g107270 5.0kb downstream 5.0kb downstream 8466 true chr7: 43755800-43764265 Medicago truncatula
Medtr7g107270 5.0kb downstream 5.0kb downstream 5000 false chr7: 43759266-43764265 Medicago truncatula
Medtr7g107270 10.0kb upstream 10.0kb upstream 13466 true chr7: 43745800-43759265 Medicago truncatula
Medtr7g107270 10.0kb upstream 10.0kb upstream 10000 false chr7: 43745800-43755799 Medicago truncatula
Medtr7g107270 10.0kb downstream 10.0kb downstream 13466 true chr7: 43755800-43769265 Medicago truncatula
Medtr7g107270 10.0kb downstream 10.0kb downstream 10000 false chr7: 43759266-43769265 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309105 5265 Fabidae View MSA
124061101 5270 Rosid View MSA
123739708 5271 Pentapetalae View MSA
122787223 5272 Eudicot View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.635        
cufflinks 4.751       Low
cufflinks 8.867        
cufflinks 14.381     High High
cufflinks 5.593       Low
cufflinks 7.978        
cufflinks 12.522     High High
cufflinks 6.342        
cufflinks 10.506     High  

0 Strain