Gene : Medtr8g028555 M. truncatula Mt4.0v1
Defline:  (1 of 5) 2.1.2.11 - 3-methyl-2-oxobutanoate hydroxymethyltransferase / Ketopantoate hydroxymethyltransferase Description:  3-methyl-2-oxobutanoate hydroxymethyltransferase
Genomic Order:  1440 Name:  ? Medtr8g028555
Secondary Identifier:  ? PAC:31076614
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PANTO-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g028555 0.5kb upstream 0.5kb upstream 3125   true chr8: 10910990-10914114 Medicago truncatula
Medtr8g028555 0.5kb upstream 0.5kb upstream 500   false chr8: 10910990-10911489 Medicago truncatula
Medtr8g028555 0.5kb downstream 0.5kb downstream 3125   true chr8: 10911490-10914614 Medicago truncatula
Medtr8g028555 0.5kb downstream 0.5kb downstream 500   false chr8: 10914115-10914614 Medicago truncatula
Medtr8g028555 1.0kb upstream 1.0kb upstream 3625   true chr8: 10910490-10914114 Medicago truncatula
Medtr8g028555 1.0kb upstream 1.0kb upstream 1000   false chr8: 10910490-10911489 Medicago truncatula
Medtr8g028555 1.0kb downstream 1.0kb downstream 3625   true chr8: 10911490-10915114 Medicago truncatula
Medtr8g028555 1.0kb downstream 1.0kb downstream 1000   false chr8: 10914115-10915114 Medicago truncatula
Medtr8g028555 2.0kb upstream 2.0kb upstream 4625   true chr8: 10909490-10914114 Medicago truncatula
Medtr8g028555 2.0kb upstream 2.0kb upstream 2000   false chr8: 10909490-10911489 Medicago truncatula
Medtr8g028555 2.0kb downstream 2.0kb downstream 4625   true chr8: 10911490-10916114 Medicago truncatula
Medtr8g028555 2.0kb downstream 2.0kb downstream 2000   false chr8: 10914115-10916114 Medicago truncatula
Medtr8g028555 5.0kb upstream 5.0kb upstream 7625   true chr8: 10906490-10914114 Medicago truncatula
Medtr8g028555 5.0kb upstream 5.0kb upstream 5000   false chr8: 10906490-10911489 Medicago truncatula
Medtr8g028555 5.0kb downstream 5.0kb downstream 7625   true chr8: 10911490-10919114 Medicago truncatula
Medtr8g028555 5.0kb downstream 5.0kb downstream 5000   false chr8: 10914115-10919114 Medicago truncatula
Medtr8g028555 10.0kb upstream 10.0kb upstream 12625   true chr8: 10901490-10914114 Medicago truncatula
Medtr8g028555 10.0kb upstream 10.0kb upstream 10000   false chr8: 10901490-10911489 Medicago truncatula
Medtr8g028555 10.0kb downstream 10.0kb downstream 12625   true chr8: 10911490-10924114 Medicago truncatula
Medtr8g028555 10.0kb downstream 10.0kb downstream 10000   false chr8: 10914115-10924114 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301613 5265 Fabidae View MSA
124063716 5270 Rosid View MSA
123736873 5271 Pentapetalae View MSA
122793216 5272 Eudicot View MSA
122047605 5273 Angiosperm View MSA
121346037 5274 Embryophyte View MSA
123424122 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.373        
cufflinks 17.277     High High
cufflinks 12.756     High  
cufflinks 4.795        
cufflinks 14.456     High  
cufflinks 1.599       Low
cufflinks 7.994        
cufflinks 14.782     High  
cufflinks 4.788        

0 Strain