Gene : Medtr8g014470 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF00124//PF00421 - Photosynthetic reaction centre protein (Photo_RC) // Photosystem II protein (PSII) Description:  photosystem II CP43 chlorophyll apoprotein
Genomic Order:  653 Name:  ? Medtr8g014470
Secondary Identifier:  ? PAC:31070406
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g014470 0.5kb upstream 0.5kb upstream 2036   true chr8: 4547570-4549605 Medicago truncatula
Medtr8g014470 0.5kb upstream 0.5kb upstream 500   false chr8: 4549106-4549605 Medicago truncatula
Medtr8g014470 0.5kb downstream 0.5kb downstream 2036   true chr8: 4547070-4549105 Medicago truncatula
Medtr8g014470 0.5kb downstream 0.5kb downstream 500   false chr8: 4547070-4547569 Medicago truncatula
Medtr8g014470 1.0kb upstream 1.0kb upstream 2536   true chr8: 4547570-4550105 Medicago truncatula
Medtr8g014470 1.0kb upstream 1.0kb upstream 1000   false chr8: 4549106-4550105 Medicago truncatula
Medtr8g014470 1.0kb downstream 1.0kb downstream 2536   true chr8: 4546570-4549105 Medicago truncatula
Medtr8g014470 1.0kb downstream 1.0kb downstream 1000   false chr8: 4546570-4547569 Medicago truncatula
Medtr8g014470 2.0kb upstream 2.0kb upstream 3536   true chr8: 4547570-4551105 Medicago truncatula
Medtr8g014470 2.0kb upstream 2.0kb upstream 2000   false chr8: 4549106-4551105 Medicago truncatula
Medtr8g014470 2.0kb downstream 2.0kb downstream 3536   true chr8: 4545570-4549105 Medicago truncatula
Medtr8g014470 2.0kb downstream 2.0kb downstream 2000   false chr8: 4545570-4547569 Medicago truncatula
Medtr8g014470 5.0kb upstream 5.0kb upstream 6536   true chr8: 4547570-4554105 Medicago truncatula
Medtr8g014470 5.0kb upstream 5.0kb upstream 5000   false chr8: 4549106-4554105 Medicago truncatula
Medtr8g014470 5.0kb downstream 5.0kb downstream 6536   true chr8: 4542570-4549105 Medicago truncatula
Medtr8g014470 5.0kb downstream 5.0kb downstream 5000   false chr8: 4542570-4547569 Medicago truncatula
Medtr8g014470 10.0kb upstream 10.0kb upstream 11536   true chr8: 4547570-4559105 Medicago truncatula
Medtr8g014470 10.0kb upstream 10.0kb upstream 10000   false chr8: 4549106-4559105 Medicago truncatula
Medtr8g014470 10.0kb downstream 10.0kb downstream 11536   true chr8: 4537570-4549105 Medicago truncatula
Medtr8g014470 10.0kb downstream 10.0kb downstream 10000   false chr8: 4537570-4547569 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122268545 5265 Fabidae Singleton cluster - no MSA
124038128 5270 Rosid View MSA
123751197 5271 Pentapetalae View MSA
122773946 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.455        
cufflinks 48.069     High High
cufflinks 63.424     High High
cufflinks 0.396        
cufflinks 37.15     High  
cufflinks 1.034        
cufflinks 0.278       Low
cufflinks 51.653     High High
cufflinks 0.424        

0 Strain