Gene : Medtr8g073540 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.5.1.20 - Rubber cis-polyprenylcistransferase / Rubber transferase Description:  undecaprenyl pyrophosphate synthase
Genomic Order:  3752 Name:  ? Medtr8g073540
Secondary Identifier:  ? PAC:31075895
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5815 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g073540 0.5kb upstream 0.5kb upstream 3280   true chr8: 31154856-31158135 Medicago truncatula
Medtr8g073540 0.5kb upstream 0.5kb upstream 500   false chr8: 31154856-31155355 Medicago truncatula
Medtr8g073540 0.5kb downstream 0.5kb downstream 3280   true chr8: 31155356-31158635 Medicago truncatula
Medtr8g073540 0.5kb downstream 0.5kb downstream 500   false chr8: 31158136-31158635 Medicago truncatula
Medtr8g073540 1.0kb upstream 1.0kb upstream 3780   true chr8: 31154356-31158135 Medicago truncatula
Medtr8g073540 1.0kb upstream 1.0kb upstream 1000   false chr8: 31154356-31155355 Medicago truncatula
Medtr8g073540 1.0kb downstream 1.0kb downstream 3780   true chr8: 31155356-31159135 Medicago truncatula
Medtr8g073540 1.0kb downstream 1.0kb downstream 1000   false chr8: 31158136-31159135 Medicago truncatula
Medtr8g073540 2.0kb upstream 2.0kb upstream 4780   true chr8: 31153356-31158135 Medicago truncatula
Medtr8g073540 2.0kb upstream 2.0kb upstream 2000   false chr8: 31153356-31155355 Medicago truncatula
Medtr8g073540 2.0kb downstream 2.0kb downstream 4780   true chr8: 31155356-31160135 Medicago truncatula
Medtr8g073540 2.0kb downstream 2.0kb downstream 2000   false chr8: 31158136-31160135 Medicago truncatula
Medtr8g073540 5.0kb upstream 5.0kb upstream 7780   true chr8: 31150356-31158135 Medicago truncatula
Medtr8g073540 5.0kb upstream 5.0kb upstream 5000   false chr8: 31150356-31155355 Medicago truncatula
Medtr8g073540 5.0kb downstream 5.0kb downstream 7780   true chr8: 31155356-31163135 Medicago truncatula
Medtr8g073540 5.0kb downstream 5.0kb downstream 5000   false chr8: 31158136-31163135 Medicago truncatula
Medtr8g073540 10.0kb upstream 10.0kb upstream 12780   true chr8: 31145356-31158135 Medicago truncatula
Medtr8g073540 10.0kb upstream 10.0kb upstream 10000   false chr8: 31145356-31155355 Medicago truncatula
Medtr8g073540 10.0kb downstream 10.0kb downstream 12780   true chr8: 31155356-31168135 Medicago truncatula
Medtr8g073540 10.0kb downstream 10.0kb downstream 10000   false chr8: 31158136-31168135 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312904 5265 Fabidae View MSA
124070400 5270 Rosid View MSA
123753715 5271 Pentapetalae View MSA
122795896 5272 Eudicot View MSA
122049873 5273 Angiosperm View MSA
121349663 5274 Embryophyte View MSA
123426106 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.272        
cufflinks 1.048        
cufflinks 0.54       Low
cufflinks 1.388        
cufflinks 0.811        
cufflinks 0.629        
cufflinks 4.372       High
cufflinks 0.782        
cufflinks 2.491        

0 Strain