Gene : Medtr8g078070 M. truncatula Mt4.0v1
Defline:  (1 of 4) 2.5.1.29 - Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase Description:  geranylgeranyl pyrophosphate synthase
Genomic Order:  4050 Name:  ? Medtr8g078070
Secondary Identifier:  ? PAC:31070592
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5120 Medicago truncatula pathologic  
Mtruncatula PWY-5910 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g078070 0.5kb upstream 0.5kb upstream 2367   true chr8: 33275074-33277440 Medicago truncatula
Medtr8g078070 0.5kb upstream 0.5kb upstream 500   false chr8: 33275074-33275573 Medicago truncatula
Medtr8g078070 0.5kb downstream 0.5kb downstream 2367   true chr8: 33275574-33277940 Medicago truncatula
Medtr8g078070 0.5kb downstream 0.5kb downstream 500   false chr8: 33277441-33277940 Medicago truncatula
Medtr8g078070 1.0kb upstream 1.0kb upstream 2867   true chr8: 33274574-33277440 Medicago truncatula
Medtr8g078070 1.0kb upstream 1.0kb upstream 1000   false chr8: 33274574-33275573 Medicago truncatula
Medtr8g078070 1.0kb downstream 1.0kb downstream 2867   true chr8: 33275574-33278440 Medicago truncatula
Medtr8g078070 1.0kb downstream 1.0kb downstream 1000   false chr8: 33277441-33278440 Medicago truncatula
Medtr8g078070 2.0kb upstream 2.0kb upstream 3867   true chr8: 33273574-33277440 Medicago truncatula
Medtr8g078070 2.0kb upstream 2.0kb upstream 2000   false chr8: 33273574-33275573 Medicago truncatula
Medtr8g078070 2.0kb downstream 2.0kb downstream 3867   true chr8: 33275574-33279440 Medicago truncatula
Medtr8g078070 2.0kb downstream 2.0kb downstream 2000   false chr8: 33277441-33279440 Medicago truncatula
Medtr8g078070 5.0kb upstream 5.0kb upstream 6867   true chr8: 33270574-33277440 Medicago truncatula
Medtr8g078070 5.0kb upstream 5.0kb upstream 5000   false chr8: 33270574-33275573 Medicago truncatula
Medtr8g078070 5.0kb downstream 5.0kb downstream 6867   true chr8: 33275574-33282440 Medicago truncatula
Medtr8g078070 5.0kb downstream 5.0kb downstream 5000   false chr8: 33277441-33282440 Medicago truncatula
Medtr8g078070 10.0kb upstream 10.0kb upstream 11867   true chr8: 33265574-33277440 Medicago truncatula
Medtr8g078070 10.0kb upstream 10.0kb upstream 10000   false chr8: 33265574-33275573 Medicago truncatula
Medtr8g078070 10.0kb downstream 10.0kb downstream 11867   true chr8: 33275574-33287440 Medicago truncatula
Medtr8g078070 10.0kb downstream 10.0kb downstream 10000   false chr8: 33277441-33287440 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300633 5265 Fabidae View MSA
124062615 5270 Rosid View MSA
123750127 5271 Pentapetalae View MSA
122794006 5272 Eudicot View MSA
122045672 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.37     High Low
cufflinks 87.276     High High
cufflinks 64.27     High  
cufflinks 16.5     High Low
cufflinks 93.482     High High
cufflinks 16.267     High Low
cufflinks 41.568     High  
cufflinks 71.469     High  
cufflinks 39.31     High  

0 Strain