Gene : Medtr8g063940 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR11558:SF25 - SPERMINE SYNTHASE Description:  spermidine synthase
Genomic Order:  3182 Name:  ? Medtr8g063940
Secondary Identifier:  ? PAC:31075562
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula BSUBPOLYAMSYN-PWY Medicago truncatula pathologic  
Mtruncatula POLYAMINSYN3-PWY Medicago truncatula pathologic  
Mtruncatula PWY-7528 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g063940 0.5kb upstream 0.5kb upstream 6200   true chr8: 26817588-26823787 Medicago truncatula
Medtr8g063940 0.5kb upstream 0.5kb upstream 500   false chr8: 26823288-26823787 Medicago truncatula
Medtr8g063940 0.5kb downstream 0.5kb downstream 6200   true chr8: 26817088-26823287 Medicago truncatula
Medtr8g063940 0.5kb downstream 0.5kb downstream 500   false chr8: 26817088-26817587 Medicago truncatula
Medtr8g063940 1.0kb upstream 1.0kb upstream 6700   true chr8: 26817588-26824287 Medicago truncatula
Medtr8g063940 1.0kb upstream 1.0kb upstream 1000   false chr8: 26823288-26824287 Medicago truncatula
Medtr8g063940 1.0kb downstream 1.0kb downstream 6700   true chr8: 26816588-26823287 Medicago truncatula
Medtr8g063940 1.0kb downstream 1.0kb downstream 1000   false chr8: 26816588-26817587 Medicago truncatula
Medtr8g063940 2.0kb upstream 2.0kb upstream 7700   true chr8: 26817588-26825287 Medicago truncatula
Medtr8g063940 2.0kb upstream 2.0kb upstream 2000   false chr8: 26823288-26825287 Medicago truncatula
Medtr8g063940 2.0kb downstream 2.0kb downstream 7700   true chr8: 26815588-26823287 Medicago truncatula
Medtr8g063940 2.0kb downstream 2.0kb downstream 2000   false chr8: 26815588-26817587 Medicago truncatula
Medtr8g063940 5.0kb upstream 5.0kb upstream 10700   true chr8: 26817588-26828287 Medicago truncatula
Medtr8g063940 5.0kb upstream 5.0kb upstream 5000   false chr8: 26823288-26828287 Medicago truncatula
Medtr8g063940 5.0kb downstream 5.0kb downstream 10700   true chr8: 26812588-26823287 Medicago truncatula
Medtr8g063940 5.0kb downstream 5.0kb downstream 5000   false chr8: 26812588-26817587 Medicago truncatula
Medtr8g063940 10.0kb upstream 10.0kb upstream 15700   true chr8: 26817588-26833287 Medicago truncatula
Medtr8g063940 10.0kb upstream 10.0kb upstream 10000   false chr8: 26823288-26833287 Medicago truncatula
Medtr8g063940 10.0kb downstream 10.0kb downstream 15700   true chr8: 26807588-26823287 Medicago truncatula
Medtr8g063940 10.0kb downstream 10.0kb downstream 10000   false chr8: 26807588-26817587 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309864 5265 Fabidae View MSA
124061949 5270 Rosid View MSA
123741827 5271 Pentapetalae View MSA
122790008 5272 Eudicot View MSA
122043696 5273 Angiosperm View MSA
121346443 5274 Embryophyte View MSA
123424303 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.81        
cufflinks 6.155        
cufflinks 4.639        
cufflinks 0.68        
cufflinks 5.739        
cufflinks 0.096     Low Low
cufflinks 1.308        
cufflinks 5.633        
cufflinks 2.951        

0 Strain