Gene : Medtr8g100105 M. truncatula Mt4.0v1
Defline:  (1 of 4) PF14604 - Variant SH3 domain (SH3_9) Description:  SH3 domain protein
Genomic Order:  5357 Name:  ? Medtr8g100105
Secondary Identifier:  ? PAC:31072063
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g100105 0.5kb upstream 0.5kb upstream 20887   true chr8: 42409857-42430743 Medicago truncatula
Medtr8g100105 0.5kb upstream 0.5kb upstream 500   false chr8: 42409857-42410356 Medicago truncatula
Medtr8g100105 0.5kb downstream 0.5kb downstream 20887   true chr8: 42410357-42431243 Medicago truncatula
Medtr8g100105 0.5kb downstream 0.5kb downstream 500   false chr8: 42430744-42431243 Medicago truncatula
Medtr8g100105 1.0kb upstream 1.0kb upstream 21387   true chr8: 42409357-42430743 Medicago truncatula
Medtr8g100105 1.0kb upstream 1.0kb upstream 1000   false chr8: 42409357-42410356 Medicago truncatula
Medtr8g100105 1.0kb downstream 1.0kb downstream 21387   true chr8: 42410357-42431743 Medicago truncatula
Medtr8g100105 1.0kb downstream 1.0kb downstream 1000   false chr8: 42430744-42431743 Medicago truncatula
Medtr8g100105 2.0kb upstream 2.0kb upstream 22387   true chr8: 42408357-42430743 Medicago truncatula
Medtr8g100105 2.0kb upstream 2.0kb upstream 2000   false chr8: 42408357-42410356 Medicago truncatula
Medtr8g100105 2.0kb downstream 2.0kb downstream 22387   true chr8: 42410357-42432743 Medicago truncatula
Medtr8g100105 2.0kb downstream 2.0kb downstream 2000   false chr8: 42430744-42432743 Medicago truncatula
Medtr8g100105 5.0kb upstream 5.0kb upstream 25387   true chr8: 42405357-42430743 Medicago truncatula
Medtr8g100105 5.0kb upstream 5.0kb upstream 5000   false chr8: 42405357-42410356 Medicago truncatula
Medtr8g100105 5.0kb downstream 5.0kb downstream 25387   true chr8: 42410357-42435743 Medicago truncatula
Medtr8g100105 5.0kb downstream 5.0kb downstream 5000   false chr8: 42430744-42435743 Medicago truncatula
Medtr8g100105 10.0kb upstream 10.0kb upstream 30387   true chr8: 42400357-42430743 Medicago truncatula
Medtr8g100105 10.0kb upstream 10.0kb upstream 10000   false chr8: 42400357-42410356 Medicago truncatula
Medtr8g100105 10.0kb downstream 10.0kb downstream 30387   true chr8: 42410357-42440743 Medicago truncatula
Medtr8g100105 10.0kb downstream 10.0kb downstream 10000   false chr8: 42430744-42440743 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309070 5265 Fabidae View MSA
124068619 5270 Rosid View MSA
123739982 5271 Pentapetalae View MSA
122785695 5272 Eudicot View MSA
122044130 5273 Angiosperm View MSA
121348962 5274 Embryophyte View MSA
123428583 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.71        
cufflinks 0.91        
cufflinks 0.717        
cufflinks 0.513        
cufflinks 1.0       High
cufflinks 0.31       Low
cufflinks 0.677        
cufflinks 0.653        
cufflinks 0.941        

0 Strain