Gene : Medtr8g100040 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC Description:  ATP-dependent Clp protease ATP-binding subunit
Genomic Order:  5052 Name:  ? Medtr8g100040
Secondary Identifier:  ? PAC:31074847
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g100040 0.5kb upstream 0.5kb upstream 6006   true chr8: 40240678-40246683 Medicago truncatula
Medtr8g100040 0.5kb upstream 0.5kb upstream 500   false chr8: 40240678-40241177 Medicago truncatula
Medtr8g100040 0.5kb downstream 0.5kb downstream 6006   true chr8: 40241178-40247183 Medicago truncatula
Medtr8g100040 0.5kb downstream 0.5kb downstream 500   false chr8: 40246684-40247183 Medicago truncatula
Medtr8g100040 1.0kb upstream 1.0kb upstream 6506   true chr8: 40240178-40246683 Medicago truncatula
Medtr8g100040 1.0kb upstream 1.0kb upstream 1000   false chr8: 40240178-40241177 Medicago truncatula
Medtr8g100040 1.0kb downstream 1.0kb downstream 6506   true chr8: 40241178-40247683 Medicago truncatula
Medtr8g100040 1.0kb downstream 1.0kb downstream 1000   false chr8: 40246684-40247683 Medicago truncatula
Medtr8g100040 2.0kb upstream 2.0kb upstream 7506   true chr8: 40239178-40246683 Medicago truncatula
Medtr8g100040 2.0kb upstream 2.0kb upstream 2000   false chr8: 40239178-40241177 Medicago truncatula
Medtr8g100040 2.0kb downstream 2.0kb downstream 7506   true chr8: 40241178-40248683 Medicago truncatula
Medtr8g100040 2.0kb downstream 2.0kb downstream 2000   false chr8: 40246684-40248683 Medicago truncatula
Medtr8g100040 5.0kb upstream 5.0kb upstream 10506   true chr8: 40236178-40246683 Medicago truncatula
Medtr8g100040 5.0kb upstream 5.0kb upstream 5000   false chr8: 40236178-40241177 Medicago truncatula
Medtr8g100040 5.0kb downstream 5.0kb downstream 10506   true chr8: 40241178-40251683 Medicago truncatula
Medtr8g100040 5.0kb downstream 5.0kb downstream 5000   false chr8: 40246684-40251683 Medicago truncatula
Medtr8g100040 10.0kb upstream 10.0kb upstream 15506   true chr8: 40231178-40246683 Medicago truncatula
Medtr8g100040 10.0kb upstream 10.0kb upstream 10000   false chr8: 40231178-40241177 Medicago truncatula
Medtr8g100040 10.0kb downstream 10.0kb downstream 15506   true chr8: 40241178-40256683 Medicago truncatula
Medtr8g100040 10.0kb downstream 10.0kb downstream 10000   false chr8: 40246684-40256683 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122294673 5265 Fabidae View MSA
124063020 5270 Rosid View MSA
123738110 5271 Pentapetalae View MSA
122796801 5272 Eudicot View MSA
122047694 5273 Angiosperm View MSA
121345923 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.56     High  
cufflinks 50.241     High  
cufflinks 56.564     High  
cufflinks 18.541     High  
cufflinks 74.798     High High
cufflinks 8.846       Low
cufflinks 21.096     High  
cufflinks 54.518     High  
cufflinks 23.362     High  

0 Strain