Gene : Medtr8g088520 M. truncatula Mt4.0v1
Defline:  (1 of 1) 3.4.22.54 - Calpain-3 / Muscle-specific calcium-activated neutral protease 3 Description:  calpain family cysteine protease
Genomic Order:  4546 Name:  ? Medtr8g088520
Secondary Identifier:  ? PAC:31075928
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g088520 0.5kb upstream 0.5kb upstream 22653   true chr8: 36701842-36724494 Medicago truncatula
Medtr8g088520 0.5kb upstream 0.5kb upstream 500   false chr8: 36701842-36702341 Medicago truncatula
Medtr8g088520 0.5kb downstream 0.5kb downstream 22653   true chr8: 36702342-36724994 Medicago truncatula
Medtr8g088520 0.5kb downstream 0.5kb downstream 500   false chr8: 36724495-36724994 Medicago truncatula
Medtr8g088520 1.0kb upstream 1.0kb upstream 23153   true chr8: 36701342-36724494 Medicago truncatula
Medtr8g088520 1.0kb upstream 1.0kb upstream 1000   false chr8: 36701342-36702341 Medicago truncatula
Medtr8g088520 1.0kb downstream 1.0kb downstream 23153   true chr8: 36702342-36725494 Medicago truncatula
Medtr8g088520 1.0kb downstream 1.0kb downstream 1000   false chr8: 36724495-36725494 Medicago truncatula
Medtr8g088520 2.0kb upstream 2.0kb upstream 24153   true chr8: 36700342-36724494 Medicago truncatula
Medtr8g088520 2.0kb upstream 2.0kb upstream 2000   false chr8: 36700342-36702341 Medicago truncatula
Medtr8g088520 2.0kb downstream 2.0kb downstream 24153   true chr8: 36702342-36726494 Medicago truncatula
Medtr8g088520 2.0kb downstream 2.0kb downstream 2000   false chr8: 36724495-36726494 Medicago truncatula
Medtr8g088520 5.0kb upstream 5.0kb upstream 27153   true chr8: 36697342-36724494 Medicago truncatula
Medtr8g088520 5.0kb upstream 5.0kb upstream 5000   false chr8: 36697342-36702341 Medicago truncatula
Medtr8g088520 5.0kb downstream 5.0kb downstream 27153   true chr8: 36702342-36729494 Medicago truncatula
Medtr8g088520 5.0kb downstream 5.0kb downstream 5000   false chr8: 36724495-36729494 Medicago truncatula
Medtr8g088520 10.0kb upstream 10.0kb upstream 32153   true chr8: 36692342-36724494 Medicago truncatula
Medtr8g088520 10.0kb upstream 10.0kb upstream 10000   false chr8: 36692342-36702341 Medicago truncatula
Medtr8g088520 10.0kb downstream 10.0kb downstream 32153   true chr8: 36702342-36734494 Medicago truncatula
Medtr8g088520 10.0kb downstream 10.0kb downstream 10000   false chr8: 36724495-36734494 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300937 5265 Fabidae View MSA
124067858 5270 Rosid View MSA
123739465 5271 Pentapetalae View MSA
122788693 5272 Eudicot View MSA
122043542 5273 Angiosperm View MSA
121345747 5274 Embryophyte View MSA
123380263 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.288        
cufflinks 3.507        
cufflinks 4.801        
cufflinks 0.639       Low
cufflinks 5.351       High
cufflinks 0.599       Low
cufflinks 1.555        
cufflinks 3.887        
cufflinks 0.959        

0 Strain