Gene : Medtr0047s0040 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR32295:SF35 - PROTEIN IQ-DOMAIN 11 Description:  IQ calmodulin-binding motif protein
Genomic Order:  2 Name:  ? Medtr0047s0040
Secondary Identifier:  ? PAC:31101025
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0047s0040 0.5kb upstream 0.5kb upstream 4294   true scaffold0047: 13025-17318 Medicago truncatula
Medtr0047s0040 0.5kb upstream 0.5kb upstream 500   false scaffold0047: 13025-13524 Medicago truncatula
Medtr0047s0040 0.5kb downstream 0.5kb downstream 4294   true scaffold0047: 13525-17818 Medicago truncatula
Medtr0047s0040 0.5kb downstream 0.5kb downstream 500   false scaffold0047: 17319-17818 Medicago truncatula
Medtr0047s0040 1.0kb upstream 1.0kb upstream 4794   true scaffold0047: 12525-17318 Medicago truncatula
Medtr0047s0040 1.0kb upstream 1.0kb upstream 1000   false scaffold0047: 12525-13524 Medicago truncatula
Medtr0047s0040 1.0kb downstream 1.0kb downstream 4794   true scaffold0047: 13525-18318 Medicago truncatula
Medtr0047s0040 1.0kb downstream 1.0kb downstream 1000   false scaffold0047: 17319-18318 Medicago truncatula
Medtr0047s0040 2.0kb upstream 2.0kb upstream 5794   true scaffold0047: 11525-17318 Medicago truncatula
Medtr0047s0040 2.0kb upstream 2.0kb upstream 2000   false scaffold0047: 11525-13524 Medicago truncatula
Medtr0047s0040 2.0kb downstream 2.0kb downstream 5794   true scaffold0047: 13525-19318 Medicago truncatula
Medtr0047s0040 2.0kb downstream 2.0kb downstream 2000   false scaffold0047: 17319-19318 Medicago truncatula
Medtr0047s0040 5.0kb upstream 5.0kb upstream 8794   true scaffold0047: 8525-17318 Medicago truncatula
Medtr0047s0040 5.0kb upstream 5.0kb upstream 5000   false scaffold0047: 8525-13524 Medicago truncatula
Medtr0047s0040 5.0kb downstream 5.0kb downstream 8794   true scaffold0047: 13525-22318 Medicago truncatula
Medtr0047s0040 5.0kb downstream 5.0kb downstream 5000   false scaffold0047: 17319-22318 Medicago truncatula
Medtr0047s0040 10.0kb upstream 10.0kb upstream 13794   true scaffold0047: 3525-17318 Medicago truncatula
Medtr0047s0040 10.0kb upstream 10.0kb upstream 10000   false scaffold0047: 3525-13524 Medicago truncatula
Medtr0047s0040 10.0kb downstream 10.0kb downstream 13794   true scaffold0047: 13525-27318 Medicago truncatula
Medtr0047s0040 10.0kb downstream 10.0kb downstream 10000   false scaffold0047: 17319-27318 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307048 5265 Fabidae View MSA
124062975 5270 Rosid View MSA
123737265 5271 Pentapetalae View MSA
122794904 5272 Eudicot View MSA
122049723 5273 Angiosperm View MSA
121311558 5274 Embryophyte View MSA
123348838 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.057     Low Low
cufflinks 2.251        
cufflinks 2.232        
cufflinks 0.331        
cufflinks 3.348       High
cufflinks 0.313        
cufflinks 0.583        
cufflinks 1.62        
cufflinks 0.332        

0 Strain