Gene : Medtr0062s0040 M. truncatula Mt4.0v1
Defline:  (1 of 17) PTHR11177//PTHR11177:SF190 - CHITINASE Description:  narbonin-like 2S protein
Genomic Order:  2 Name:  ? Medtr0062s0040
Secondary Identifier:  ? PAC:31100865
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6902 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0062s0040 0.5kb upstream 0.5kb upstream 1823   true scaffold0062: 14841-16663 Medicago truncatula
Medtr0062s0040 0.5kb upstream 0.5kb upstream 500   false scaffold0062: 14841-15340 Medicago truncatula
Medtr0062s0040 0.5kb downstream 0.5kb downstream 1823   true scaffold0062: 15341-17163 Medicago truncatula
Medtr0062s0040 0.5kb downstream 0.5kb downstream 500   false scaffold0062: 16664-17163 Medicago truncatula
Medtr0062s0040 1.0kb upstream 1.0kb upstream 2323   true scaffold0062: 14341-16663 Medicago truncatula
Medtr0062s0040 1.0kb upstream 1.0kb upstream 1000   false scaffold0062: 14341-15340 Medicago truncatula
Medtr0062s0040 1.0kb downstream 1.0kb downstream 2323   true scaffold0062: 15341-17663 Medicago truncatula
Medtr0062s0040 1.0kb downstream 1.0kb downstream 1000   false scaffold0062: 16664-17663 Medicago truncatula
Medtr0062s0040 2.0kb upstream 2.0kb upstream 3323   true scaffold0062: 13341-16663 Medicago truncatula
Medtr0062s0040 2.0kb upstream 2.0kb upstream 2000   false scaffold0062: 13341-15340 Medicago truncatula
Medtr0062s0040 2.0kb downstream 2.0kb downstream 3323   true scaffold0062: 15341-18663 Medicago truncatula
Medtr0062s0040 2.0kb downstream 2.0kb downstream 2000   false scaffold0062: 16664-18663 Medicago truncatula
Medtr0062s0040 5.0kb upstream 5.0kb upstream 6323   true scaffold0062: 10341-16663 Medicago truncatula
Medtr0062s0040 5.0kb upstream 5.0kb upstream 5000   false scaffold0062: 10341-15340 Medicago truncatula
Medtr0062s0040 5.0kb downstream 5.0kb downstream 6323   true scaffold0062: 15341-21663 Medicago truncatula
Medtr0062s0040 5.0kb downstream 5.0kb downstream 5000   false scaffold0062: 16664-21663 Medicago truncatula
Medtr0062s0040 10.0kb upstream 10.0kb upstream 11323   true scaffold0062: 5341-16663 Medicago truncatula
Medtr0062s0040 10.0kb upstream 10.0kb upstream 10000   false scaffold0062: 5341-15340 Medicago truncatula
Medtr0062s0040 10.0kb downstream 10.0kb downstream 11323   true scaffold0062: 15341-26663 Medicago truncatula
Medtr0062s0040 10.0kb downstream 10.0kb downstream 10000   false scaffold0062: 16664-26663 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316551 5265 Fabidae View MSA
124072600 5270 Rosid View MSA
123749602 5271 Pentapetalae View MSA
122797171 5272 Eudicot View MSA
122049953 5273 Angiosperm View MSA
121348698 5274 Embryophyte View MSA
123380978 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain