Gene : Medtr8g005870 M. truncatula Mt4.0v1
Defline:  (1 of 210) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  46 Name:  ? Medtr8g005870
Secondary Identifier:  ? PAC:31076415
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g005870 0.5kb upstream 0.5kb upstream 1972   true chr8: 372032-374003 Medicago truncatula
Medtr8g005870 0.5kb upstream 0.5kb upstream 500   false chr8: 373504-374003 Medicago truncatula
Medtr8g005870 0.5kb downstream 0.5kb downstream 1972   true chr8: 371532-373503 Medicago truncatula
Medtr8g005870 0.5kb downstream 0.5kb downstream 500   false chr8: 371532-372031 Medicago truncatula
Medtr8g005870 1.0kb upstream 1.0kb upstream 2472   true chr8: 372032-374503 Medicago truncatula
Medtr8g005870 1.0kb upstream 1.0kb upstream 1000   false chr8: 373504-374503 Medicago truncatula
Medtr8g005870 1.0kb downstream 1.0kb downstream 2472   true chr8: 371032-373503 Medicago truncatula
Medtr8g005870 1.0kb downstream 1.0kb downstream 1000   false chr8: 371032-372031 Medicago truncatula
Medtr8g005870 2.0kb upstream 2.0kb upstream 3472   true chr8: 372032-375503 Medicago truncatula
Medtr8g005870 2.0kb upstream 2.0kb upstream 2000   false chr8: 373504-375503 Medicago truncatula
Medtr8g005870 2.0kb downstream 2.0kb downstream 3472   true chr8: 370032-373503 Medicago truncatula
Medtr8g005870 2.0kb downstream 2.0kb downstream 2000   false chr8: 370032-372031 Medicago truncatula
Medtr8g005870 5.0kb upstream 5.0kb upstream 6472   true chr8: 372032-378503 Medicago truncatula
Medtr8g005870 5.0kb upstream 5.0kb upstream 5000   false chr8: 373504-378503 Medicago truncatula
Medtr8g005870 5.0kb downstream 5.0kb downstream 6472   true chr8: 367032-373503 Medicago truncatula
Medtr8g005870 5.0kb downstream 5.0kb downstream 5000   false chr8: 367032-372031 Medicago truncatula
Medtr8g005870 10.0kb upstream 10.0kb upstream 11472   true chr8: 372032-383503 Medicago truncatula
Medtr8g005870 10.0kb upstream 10.0kb upstream 10000   false chr8: 373504-383503 Medicago truncatula
Medtr8g005870 10.0kb downstream 10.0kb downstream 11472   true chr8: 362032-373503 Medicago truncatula
Medtr8g005870 10.0kb downstream 10.0kb downstream 10000   false chr8: 362032-372031 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301298 5265 Fabidae View MSA
124050377 5270 Rosid View MSA
123739053 5271 Pentapetalae View MSA
122787192 5272 Eudicot View MSA
122046913 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.462        
cufflinks 2.892        
cufflinks 3.685        
cufflinks 0.703       Low
cufflinks 7.74       High
cufflinks 0.822       Low
cufflinks 1.892        
cufflinks 3.849        
cufflinks 2.331        

0 Strain