Gene : Medtr0002s0660 M. truncatula Mt4.0v1
Defline:  (1 of 1) 4.1.1.39//6.3.1.2 - Ribulose-bisphosphate carboxylase / RuBP carboxylase // Glutamate--ammonia ligase / Glutamine synthetase Description:  ribulose bisphosphate carboxylase large chain domain protein
Genomic Order:  38 Name:  ? Medtr0002s0660
Secondary Identifier:  ? PAC:31084711
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9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CALVIN-PWY Medicago truncatula pathologic  
Mtruncatula GLNSYN-PWY Medicago truncatula pathologic  
Mtruncatula PHOTOALL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-3282 Medicago truncatula pathologic  
Mtruncatula PWY-381 Medicago truncatula pathologic  
Mtruncatula PWY-5723 Medicago truncatula pathologic  
Mtruncatula PWY-6549 Medicago truncatula pathologic  
Mtruncatula PWY-6963 Medicago truncatula pathologic  
Mtruncatula PWY-6964 Medicago truncatula pathologic  

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0002s0660 0.5kb upstream 0.5kb upstream 1940   true scaffold0002: 254099-256038 Medicago truncatula
Medtr0002s0660 0.5kb upstream 0.5kb upstream 500   false scaffold0002: 254099-254598 Medicago truncatula
Medtr0002s0660 0.5kb downstream 0.5kb downstream 1940   true scaffold0002: 254599-256538 Medicago truncatula
Medtr0002s0660 0.5kb downstream 0.5kb downstream 500   false scaffold0002: 256039-256538 Medicago truncatula
Medtr0002s0660 1.0kb upstream 1.0kb upstream 2440   true scaffold0002: 253599-256038 Medicago truncatula
Medtr0002s0660 1.0kb upstream 1.0kb upstream 1000   false scaffold0002: 253599-254598 Medicago truncatula
Medtr0002s0660 1.0kb downstream 1.0kb downstream 2440   true scaffold0002: 254599-257038 Medicago truncatula
Medtr0002s0660 1.0kb downstream 1.0kb downstream 1000   false scaffold0002: 256039-257038 Medicago truncatula
Medtr0002s0660 2.0kb upstream 2.0kb upstream 3440   true scaffold0002: 252599-256038 Medicago truncatula
Medtr0002s0660 2.0kb upstream 2.0kb upstream 2000   false scaffold0002: 252599-254598 Medicago truncatula
Medtr0002s0660 2.0kb downstream 2.0kb downstream 3440   true scaffold0002: 254599-258038 Medicago truncatula
Medtr0002s0660 2.0kb downstream 2.0kb downstream 2000   false scaffold0002: 256039-258038 Medicago truncatula
Medtr0002s0660 5.0kb upstream 5.0kb upstream 6440   true scaffold0002: 249599-256038 Medicago truncatula
Medtr0002s0660 5.0kb upstream 5.0kb upstream 5000   false scaffold0002: 249599-254598 Medicago truncatula
Medtr0002s0660 5.0kb downstream 5.0kb downstream 6440   true scaffold0002: 254599-261038 Medicago truncatula
Medtr0002s0660 5.0kb downstream 5.0kb downstream 5000   false scaffold0002: 256039-261038 Medicago truncatula
Medtr0002s0660 10.0kb upstream 10.0kb upstream 11440   true scaffold0002: 244599-256038 Medicago truncatula
Medtr0002s0660 10.0kb upstream 10.0kb upstream 10000   false scaffold0002: 244599-254598 Medicago truncatula
Medtr0002s0660 10.0kb downstream 10.0kb downstream 11440   true scaffold0002: 254599-266038 Medicago truncatula
Medtr0002s0660 10.0kb downstream 10.0kb downstream 10000   false scaffold0002: 256039-266038 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122270052 5265 Fabidae Singleton cluster - no MSA
124038153 5270 Rosid View MSA
123753610 5271 Pentapetalae View MSA
122775167 5272 Eudicot View MSA
122051023 5273 Angiosperm View MSA
121312251 5274 Embryophyte View MSA
123428195 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain