Gene : Medtr0004s0220 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR21098 - RIBOFLAVIN SYNTHASE ALPHA CHAIN Description:  riboflavin synthase alpha chain
Genomic Order:  4 Name:  ? Medtr0004s0220
Secondary Identifier:  ? PAC:31076751
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula RIBOSYN2-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0004s0220 0.5kb upstream 0.5kb upstream 1486   true scaffold0004: 88620-90105 Medicago truncatula
Medtr0004s0220 0.5kb upstream 0.5kb upstream 500   false scaffold0004: 88620-89119 Medicago truncatula
Medtr0004s0220 0.5kb downstream 0.5kb downstream 1486   true scaffold0004: 89120-90605 Medicago truncatula
Medtr0004s0220 0.5kb downstream 0.5kb downstream 500   false scaffold0004: 90106-90605 Medicago truncatula
Medtr0004s0220 1.0kb upstream 1.0kb upstream 1986   true scaffold0004: 88120-90105 Medicago truncatula
Medtr0004s0220 1.0kb upstream 1.0kb upstream 1000   false scaffold0004: 88120-89119 Medicago truncatula
Medtr0004s0220 1.0kb downstream 1.0kb downstream 1986   true scaffold0004: 89120-91105 Medicago truncatula
Medtr0004s0220 1.0kb downstream 1.0kb downstream 1000   false scaffold0004: 90106-91105 Medicago truncatula
Medtr0004s0220 2.0kb upstream 2.0kb upstream 2986   true scaffold0004: 87120-90105 Medicago truncatula
Medtr0004s0220 2.0kb upstream 2.0kb upstream 2000   false scaffold0004: 87120-89119 Medicago truncatula
Medtr0004s0220 2.0kb downstream 2.0kb downstream 2986   true scaffold0004: 89120-92105 Medicago truncatula
Medtr0004s0220 2.0kb downstream 2.0kb downstream 2000   false scaffold0004: 90106-92105 Medicago truncatula
Medtr0004s0220 5.0kb upstream 5.0kb upstream 5986   true scaffold0004: 84120-90105 Medicago truncatula
Medtr0004s0220 5.0kb upstream 5.0kb upstream 5000   false scaffold0004: 84120-89119 Medicago truncatula
Medtr0004s0220 5.0kb downstream 5.0kb downstream 5986   true scaffold0004: 89120-95105 Medicago truncatula
Medtr0004s0220 5.0kb downstream 5.0kb downstream 5000   false scaffold0004: 90106-95105 Medicago truncatula
Medtr0004s0220 10.0kb upstream 10.0kb upstream 10986   true scaffold0004: 79120-90105 Medicago truncatula
Medtr0004s0220 10.0kb upstream 10.0kb upstream 10000   false scaffold0004: 79120-89119 Medicago truncatula
Medtr0004s0220 10.0kb downstream 10.0kb downstream 10986   true scaffold0004: 89120-100105 Medicago truncatula
Medtr0004s0220 10.0kb downstream 10.0kb downstream 10000   false scaffold0004: 90106-100105 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302655 5265 Fabidae View MSA
124067605 5270 Rosid View MSA
123749559 5271 Pentapetalae View MSA
122790279 5272 Eudicot View MSA
122043158 5273 Angiosperm View MSA
121344512 5274 Embryophyte View MSA
123423798 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.442       Low
cufflinks 24.205     High  
cufflinks 18.882     High  
cufflinks 23.787     High  
cufflinks 31.17     High High
cufflinks 14.259     High  
cufflinks 7.31       Low
cufflinks 18.744     High  
cufflinks 12.656     High  

0 Strain