Gene : Medtr0004s0130 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31805:SF3 - PROLINE-RICH PROTEIN-RELATED Description:  structural constituent of cell wall protein, putative
Genomic Order:  1 Name:  ? Medtr0004s0130
Secondary Identifier:  ? PAC:31076740
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0004s0130 0.5kb upstream 0.5kb upstream 6434   true scaffold0004: 31693-38126 Medicago truncatula
Medtr0004s0130 0.5kb upstream 0.5kb upstream 500   false scaffold0004: 37627-38126 Medicago truncatula
Medtr0004s0130 0.5kb downstream 0.5kb downstream 6434   true scaffold0004: 31193-37626 Medicago truncatula
Medtr0004s0130 0.5kb downstream 0.5kb downstream 500   false scaffold0004: 31193-31692 Medicago truncatula
Medtr0004s0130 1.0kb upstream 1.0kb upstream 6934   true scaffold0004: 31693-38626 Medicago truncatula
Medtr0004s0130 1.0kb upstream 1.0kb upstream 1000   false scaffold0004: 37627-38626 Medicago truncatula
Medtr0004s0130 1.0kb downstream 1.0kb downstream 6934   true scaffold0004: 30693-37626 Medicago truncatula
Medtr0004s0130 1.0kb downstream 1.0kb downstream 1000   false scaffold0004: 30693-31692 Medicago truncatula
Medtr0004s0130 2.0kb upstream 2.0kb upstream 7934   true scaffold0004: 31693-39626 Medicago truncatula
Medtr0004s0130 2.0kb upstream 2.0kb upstream 2000   false scaffold0004: 37627-39626 Medicago truncatula
Medtr0004s0130 2.0kb downstream 2.0kb downstream 7934   true scaffold0004: 29693-37626 Medicago truncatula
Medtr0004s0130 2.0kb downstream 2.0kb downstream 2000   false scaffold0004: 29693-31692 Medicago truncatula
Medtr0004s0130 5.0kb upstream 5.0kb upstream 10934   true scaffold0004: 31693-42626 Medicago truncatula
Medtr0004s0130 5.0kb upstream 5.0kb upstream 5000   false scaffold0004: 37627-42626 Medicago truncatula
Medtr0004s0130 5.0kb downstream 5.0kb downstream 10934   true scaffold0004: 26693-37626 Medicago truncatula
Medtr0004s0130 5.0kb downstream 5.0kb downstream 5000   false scaffold0004: 26693-31692 Medicago truncatula
Medtr0004s0130 10.0kb upstream 10.0kb upstream 15934   true scaffold0004: 31693-47626 Medicago truncatula
Medtr0004s0130 10.0kb upstream 10.0kb upstream 10000   false scaffold0004: 37627-47626 Medicago truncatula
Medtr0004s0130 10.0kb downstream 10.0kb downstream 15934   true scaffold0004: 21693-37626 Medicago truncatula
Medtr0004s0130 10.0kb downstream 10.0kb downstream 10000   false scaffold0004: 21693-31692 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302317 5265 Fabidae View MSA
124071409 5270 Rosid View MSA
123740794 5271 Pentapetalae View MSA
122789592 5272 Eudicot View MSA
122050948 5273 Angiosperm View MSA
121350556 5274 Embryophyte View MSA
123427524 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.143     High  
cufflinks 5.397        
cufflinks 6.668        
cufflinks 14.067     High High
cufflinks 4.772       Low
cufflinks 8.735        
cufflinks 9.28        
cufflinks 5.507        
cufflinks 15.215     High High

0 Strain