Gene : Medtr0014s0180 M. truncatula Mt4.0v1
Defline:  (1 of 599) PF13041 - PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  7 Name:  ? Medtr0014s0180
Secondary Identifier:  ? PAC:31069315
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0014s0180 0.5kb upstream 0.5kb upstream 2147   true scaffold0014: 104291-106437 Medicago truncatula
Medtr0014s0180 0.5kb upstream 0.5kb upstream 500   false scaffold0014: 105938-106437 Medicago truncatula
Medtr0014s0180 0.5kb downstream 0.5kb downstream 2147   true scaffold0014: 103791-105937 Medicago truncatula
Medtr0014s0180 0.5kb downstream 0.5kb downstream 500   false scaffold0014: 103791-104290 Medicago truncatula
Medtr0014s0180 1.0kb upstream 1.0kb upstream 2647   true scaffold0014: 104291-106937 Medicago truncatula
Medtr0014s0180 1.0kb upstream 1.0kb upstream 1000   false scaffold0014: 105938-106937 Medicago truncatula
Medtr0014s0180 1.0kb downstream 1.0kb downstream 2647   true scaffold0014: 103291-105937 Medicago truncatula
Medtr0014s0180 1.0kb downstream 1.0kb downstream 1000   false scaffold0014: 103291-104290 Medicago truncatula
Medtr0014s0180 2.0kb upstream 2.0kb upstream 3647   true scaffold0014: 104291-107937 Medicago truncatula
Medtr0014s0180 2.0kb upstream 2.0kb upstream 2000   false scaffold0014: 105938-107937 Medicago truncatula
Medtr0014s0180 2.0kb downstream 2.0kb downstream 3647   true scaffold0014: 102291-105937 Medicago truncatula
Medtr0014s0180 2.0kb downstream 2.0kb downstream 2000   false scaffold0014: 102291-104290 Medicago truncatula
Medtr0014s0180 5.0kb upstream 5.0kb upstream 6647   true scaffold0014: 104291-110937 Medicago truncatula
Medtr0014s0180 5.0kb upstream 5.0kb upstream 5000   false scaffold0014: 105938-110937 Medicago truncatula
Medtr0014s0180 5.0kb downstream 5.0kb downstream 6647   true scaffold0014: 99291-105937 Medicago truncatula
Medtr0014s0180 5.0kb downstream 5.0kb downstream 5000   false scaffold0014: 99291-104290 Medicago truncatula
Medtr0014s0180 10.0kb upstream 10.0kb upstream 11647   true scaffold0014: 104291-115937 Medicago truncatula
Medtr0014s0180 10.0kb upstream 10.0kb upstream 10000   false scaffold0014: 105938-115937 Medicago truncatula
Medtr0014s0180 10.0kb downstream 10.0kb downstream 11647   true scaffold0014: 94291-105937 Medicago truncatula
Medtr0014s0180 10.0kb downstream 10.0kb downstream 10000   false scaffold0014: 94291-104290 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.177       High
cufflinks 0.009     Low Low
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.077        
cufflinks 0.037     Low  
cufflinks 0.018     Low  

0 Strain