Gene : Medtr0011s0100 M. truncatula Mt4.0v1
Defline:  (1 of 17) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H Description:  Pol polyprotein/retrotransposon, putative
Genomic Order:  2 Name:  ? Medtr0011s0100
Secondary Identifier:  ? PAC:31101179
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0011s0100 0.5kb upstream 0.5kb upstream 3947   true scaffold0011: 121477-125423 Medicago truncatula
Medtr0011s0100 0.5kb upstream 0.5kb upstream 500   false scaffold0011: 121477-121976 Medicago truncatula
Medtr0011s0100 0.5kb downstream 0.5kb downstream 3947   true scaffold0011: 121977-125923 Medicago truncatula
Medtr0011s0100 0.5kb downstream 0.5kb downstream 500   false scaffold0011: 125424-125923 Medicago truncatula
Medtr0011s0100 1.0kb upstream 1.0kb upstream 4447   true scaffold0011: 120977-125423 Medicago truncatula
Medtr0011s0100 1.0kb upstream 1.0kb upstream 1000   false scaffold0011: 120977-121976 Medicago truncatula
Medtr0011s0100 1.0kb downstream 1.0kb downstream 4447   true scaffold0011: 121977-126423 Medicago truncatula
Medtr0011s0100 1.0kb downstream 1.0kb downstream 1000   false scaffold0011: 125424-126423 Medicago truncatula
Medtr0011s0100 2.0kb upstream 2.0kb upstream 5447   true scaffold0011: 119977-125423 Medicago truncatula
Medtr0011s0100 2.0kb upstream 2.0kb upstream 2000   false scaffold0011: 119977-121976 Medicago truncatula
Medtr0011s0100 2.0kb downstream 2.0kb downstream 5447   true scaffold0011: 121977-127423 Medicago truncatula
Medtr0011s0100 2.0kb downstream 2.0kb downstream 2000   false scaffold0011: 125424-127423 Medicago truncatula
Medtr0011s0100 5.0kb upstream 5.0kb upstream 8447   true scaffold0011: 116977-125423 Medicago truncatula
Medtr0011s0100 5.0kb upstream 5.0kb upstream 5000   false scaffold0011: 116977-121976 Medicago truncatula
Medtr0011s0100 5.0kb downstream 5.0kb downstream 8447   true scaffold0011: 121977-130423 Medicago truncatula
Medtr0011s0100 5.0kb downstream 5.0kb downstream 5000   false scaffold0011: 125424-130423 Medicago truncatula
Medtr0011s0100 10.0kb upstream 10.0kb upstream 13447   true scaffold0011: 111977-125423 Medicago truncatula
Medtr0011s0100 10.0kb upstream 10.0kb upstream 10000   false scaffold0011: 111977-121976 Medicago truncatula
Medtr0011s0100 10.0kb downstream 10.0kb downstream 13447   true scaffold0011: 121977-135423 Medicago truncatula
Medtr0011s0100 10.0kb downstream 10.0kb downstream 10000   false scaffold0011: 125424-135423 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315331 5265 Fabidae View MSA
124038218 5270 Rosid View MSA
123753427 5271 Pentapetalae View MSA
122797714 5272 Eudicot View MSA
122051549 5273 Angiosperm View MSA
123429154 5275 Viridiplantae View MSA
121351706 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain