Gene : Medtr8g471160 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11035 - PTPLA DOMAIN PROTEIN Description:  3-hydroxyacyl-CoA dehydratase
Genomic Order:  3449 Name:  ? Medtr8g471160
Secondary Identifier:  ? PAC:31070648
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7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5080 Medicago truncatula pathologic  
Mtruncatula PWY-6433 Medicago truncatula pathologic  
Mtruncatula PWY-6598 Medicago truncatula pathologic  
Mtruncatula PWY-7036 Medicago truncatula pathologic  
Mtruncatula PWY-7601 Medicago truncatula pathologic  
Mtruncatula PWY-7606 Medicago truncatula pathologic  
Mtruncatula PWY-7619 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g471160 0.5kb upstream 0.5kb upstream 3580   true chr8: 28766835-28770414 Medicago truncatula
Medtr8g471160 0.5kb upstream 0.5kb upstream 500   false chr8: 28766835-28767334 Medicago truncatula
Medtr8g471160 0.5kb downstream 0.5kb downstream 3580   true chr8: 28767335-28770914 Medicago truncatula
Medtr8g471160 0.5kb downstream 0.5kb downstream 500   false chr8: 28770415-28770914 Medicago truncatula
Medtr8g471160 1.0kb upstream 1.0kb upstream 4080   true chr8: 28766335-28770414 Medicago truncatula
Medtr8g471160 1.0kb upstream 1.0kb upstream 1000   false chr8: 28766335-28767334 Medicago truncatula
Medtr8g471160 1.0kb downstream 1.0kb downstream 4080   true chr8: 28767335-28771414 Medicago truncatula
Medtr8g471160 1.0kb downstream 1.0kb downstream 1000   false chr8: 28770415-28771414 Medicago truncatula
Medtr8g471160 2.0kb upstream 2.0kb upstream 5080   true chr8: 28765335-28770414 Medicago truncatula
Medtr8g471160 2.0kb upstream 2.0kb upstream 2000   false chr8: 28765335-28767334 Medicago truncatula
Medtr8g471160 2.0kb downstream 2.0kb downstream 5080   true chr8: 28767335-28772414 Medicago truncatula
Medtr8g471160 2.0kb downstream 2.0kb downstream 2000   false chr8: 28770415-28772414 Medicago truncatula
Medtr8g471160 5.0kb upstream 5.0kb upstream 8080   true chr8: 28762335-28770414 Medicago truncatula
Medtr8g471160 5.0kb upstream 5.0kb upstream 5000   false chr8: 28762335-28767334 Medicago truncatula
Medtr8g471160 5.0kb downstream 5.0kb downstream 8080   true chr8: 28767335-28775414 Medicago truncatula
Medtr8g471160 5.0kb downstream 5.0kb downstream 5000   false chr8: 28770415-28775414 Medicago truncatula
Medtr8g471160 10.0kb upstream 10.0kb upstream 13080   true chr8: 28757335-28770414 Medicago truncatula
Medtr8g471160 10.0kb upstream 10.0kb upstream 10000   false chr8: 28757335-28767334 Medicago truncatula
Medtr8g471160 10.0kb downstream 10.0kb downstream 13080   true chr8: 28767335-28780414 Medicago truncatula
Medtr8g471160 10.0kb downstream 10.0kb downstream 10000   false chr8: 28770415-28780414 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302169 5265 Fabidae View MSA
124067090 5270 Rosid View MSA
123747996 5271 Pentapetalae View MSA
122792245 5272 Eudicot View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.966       Low
cufflinks 3.545        
cufflinks 3.931        
cufflinks 2.712        
cufflinks 4.965       High
cufflinks 0.938       Low
cufflinks 1.419        
cufflinks 3.071        
cufflinks 1.227        

0 Strain