Gene : Medtr1457s0010 M. truncatula Mt4.0v1
Defline:  (1 of 17) PTHR11177//PTHR11177:SF190 - CHITINASE Description:  glycoside hydrolase family 18 protein
Genomic Order:  1 Name:  ? Medtr1457s0010
Secondary Identifier:  ? PAC:31076865
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6902 Medicago truncatula pathologic  

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr1457s0010 0.5kb upstream 0.5kb upstream 871 true scaffold1457: 1-871 Medicago truncatula
Medtr1457s0010 0.5kb upstream 0.5kb upstream 1 false scaffold1457: 1-1 Medicago truncatula
Medtr1457s0010 0.5kb downstream 0.5kb downstream 1370 true scaffold1457: 2-1371 Medicago truncatula
Medtr1457s0010 0.5kb downstream 0.5kb downstream 500 false scaffold1457: 872-1371 Medicago truncatula
Medtr1457s0010 1.0kb upstream 1.0kb upstream 871 true scaffold1457: 1-871 Medicago truncatula
Medtr1457s0010 1.0kb upstream 1.0kb upstream 1 false scaffold1457: 1-1 Medicago truncatula
Medtr1457s0010 1.0kb downstream 1.0kb downstream 1780 true scaffold1457: 2-1781 Medicago truncatula
Medtr1457s0010 1.0kb downstream 1.0kb downstream 910 false scaffold1457: 872-1781 Medicago truncatula
Medtr1457s0010 2.0kb upstream 2.0kb upstream 871 true scaffold1457: 1-871 Medicago truncatula
Medtr1457s0010 2.0kb upstream 2.0kb upstream 1 false scaffold1457: 1-1 Medicago truncatula
Medtr1457s0010 2.0kb downstream 2.0kb downstream 1780 true scaffold1457: 2-1781 Medicago truncatula
Medtr1457s0010 2.0kb downstream 2.0kb downstream 910 false scaffold1457: 872-1781 Medicago truncatula
Medtr1457s0010 5.0kb upstream 5.0kb upstream 871 true scaffold1457: 1-871 Medicago truncatula
Medtr1457s0010 5.0kb upstream 5.0kb upstream 1 false scaffold1457: 1-1 Medicago truncatula
Medtr1457s0010 5.0kb downstream 5.0kb downstream 1780 true scaffold1457: 2-1781 Medicago truncatula
Medtr1457s0010 5.0kb downstream 5.0kb downstream 910 false scaffold1457: 872-1781 Medicago truncatula
Medtr1457s0010 10.0kb upstream 10.0kb upstream 871 true scaffold1457: 1-871 Medicago truncatula
Medtr1457s0010 10.0kb upstream 10.0kb upstream 1 false scaffold1457: 1-1 Medicago truncatula
Medtr1457s0010 10.0kb downstream 10.0kb downstream 1780 true scaffold1457: 2-1781 Medicago truncatula
Medtr1457s0010 10.0kb downstream 10.0kb downstream 910 false scaffold1457: 872-1781 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122271074 5265 Fabidae Singleton cluster - no MSA
124051168 5270 Rosid View MSA
123757988 5271 Pentapetalae View MSA
122778989 5272 Eudicot View MSA
122051321 5273 Angiosperm View MSA
121348698 5274 Embryophyte View MSA
123380978 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 160.453     High High
cufflinks 17.397     High  
cufflinks 0.129       Low
cufflinks 56.639     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.268       Low
cufflinks 155.931     High High
cufflinks 1.879        

0 Strain