Gene : Medtr0392s0020 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR11064:SF42 - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 Description:  nuclear transcription factor Y protein
Genomic Order:  2 Name:  ? Medtr0392s0020
Secondary Identifier:  ? PAC:31061671
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0392s0020 0.5kb upstream 0.5kb upstream 1224 true scaffold0392: 14341-15564 Medicago truncatula
Medtr0392s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0392: 15065-15564 Medicago truncatula
Medtr0392s0020 0.5kb downstream 0.5kb downstream 1224 true scaffold0392: 13841-15064 Medicago truncatula
Medtr0392s0020 0.5kb downstream 0.5kb downstream 500 false scaffold0392: 13841-14340 Medicago truncatula
Medtr0392s0020 1.0kb upstream 1.0kb upstream 1724 true scaffold0392: 14341-16064 Medicago truncatula
Medtr0392s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0392: 15065-16064 Medicago truncatula
Medtr0392s0020 1.0kb downstream 1.0kb downstream 1724 true scaffold0392: 13341-15064 Medicago truncatula
Medtr0392s0020 1.0kb downstream 1.0kb downstream 1000 false scaffold0392: 13341-14340 Medicago truncatula
Medtr0392s0020 2.0kb upstream 2.0kb upstream 2215 true scaffold0392: 14341-16555 Medicago truncatula
Medtr0392s0020 2.0kb upstream 2.0kb upstream 1491 false scaffold0392: 15065-16555 Medicago truncatula
Medtr0392s0020 2.0kb downstream 2.0kb downstream 2724 true scaffold0392: 12341-15064 Medicago truncatula
Medtr0392s0020 2.0kb downstream 2.0kb downstream 2000 false scaffold0392: 12341-14340 Medicago truncatula
Medtr0392s0020 5.0kb upstream 5.0kb upstream 2215 true scaffold0392: 14341-16555 Medicago truncatula
Medtr0392s0020 5.0kb upstream 5.0kb upstream 1491 false scaffold0392: 15065-16555 Medicago truncatula
Medtr0392s0020 5.0kb downstream 5.0kb downstream 5724 true scaffold0392: 9341-15064 Medicago truncatula
Medtr0392s0020 5.0kb downstream 5.0kb downstream 5000 false scaffold0392: 9341-14340 Medicago truncatula
Medtr0392s0020 10.0kb upstream 10.0kb upstream 2215 true scaffold0392: 14341-16555 Medicago truncatula
Medtr0392s0020 10.0kb upstream 10.0kb upstream 1491 false scaffold0392: 15065-16555 Medicago truncatula
Medtr0392s0020 10.0kb downstream 10.0kb downstream 10724 true scaffold0392: 4341-15064 Medicago truncatula
Medtr0392s0020 10.0kb downstream 10.0kb downstream 10000 false scaffold0392: 4341-14340 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041139 5273 Angiosperm View MSA
122315080 5265 Fabidae View MSA
124070521 5270 Rosid View MSA
123747842 5271 Pentapetalae View MSA
122796503 5272 Eudicot View MSA
123429094 5275 Viridiplantae View MSA
121350139 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.521       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.289       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.586        
cufflinks 0.589        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.826        

0 Strain