Gene : Medtr0393s0040 M. truncatula Mt4.0v1
Description:  zinc finger SWIM domain protein Genomic Order:  3
Name:  ? Medtr0393s0040 Secondary Identifier:  ? PAC:31092433
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0393s0040 0.5kb upstream 0.5kb upstream 1958 true scaffold0393: 11087-13044 Medicago truncatula
Medtr0393s0040 0.5kb upstream 0.5kb upstream 500 false scaffold0393: 11087-11586 Medicago truncatula
Medtr0393s0040 0.5kb downstream 0.5kb downstream 1958 true scaffold0393: 11587-13544 Medicago truncatula
Medtr0393s0040 0.5kb downstream 0.5kb downstream 500 false scaffold0393: 13045-13544 Medicago truncatula
Medtr0393s0040 1.0kb upstream 1.0kb upstream 2458 true scaffold0393: 10587-13044 Medicago truncatula
Medtr0393s0040 1.0kb upstream 1.0kb upstream 1000 false scaffold0393: 10587-11586 Medicago truncatula
Medtr0393s0040 1.0kb downstream 1.0kb downstream 2458 true scaffold0393: 11587-14044 Medicago truncatula
Medtr0393s0040 1.0kb downstream 1.0kb downstream 1000 false scaffold0393: 13045-14044 Medicago truncatula
Medtr0393s0040 2.0kb upstream 2.0kb upstream 3458 true scaffold0393: 9587-13044 Medicago truncatula
Medtr0393s0040 2.0kb upstream 2.0kb upstream 2000 false scaffold0393: 9587-11586 Medicago truncatula
Medtr0393s0040 2.0kb downstream 2.0kb downstream 3458 true scaffold0393: 11587-15044 Medicago truncatula
Medtr0393s0040 2.0kb downstream 2.0kb downstream 2000 false scaffold0393: 13045-15044 Medicago truncatula
Medtr0393s0040 5.0kb upstream 5.0kb upstream 6458 true scaffold0393: 6587-13044 Medicago truncatula
Medtr0393s0040 5.0kb upstream 5.0kb upstream 5000 false scaffold0393: 6587-11586 Medicago truncatula
Medtr0393s0040 5.0kb downstream 5.0kb downstream 4960 true scaffold0393: 11587-16546 Medicago truncatula
Medtr0393s0040 5.0kb downstream 5.0kb downstream 3502 false scaffold0393: 13045-16546 Medicago truncatula
Medtr0393s0040 10.0kb upstream 10.0kb upstream 11458 true scaffold0393: 1587-13044 Medicago truncatula
Medtr0393s0040 10.0kb upstream 10.0kb upstream 10000 false scaffold0393: 1587-11586 Medicago truncatula
Medtr0393s0040 10.0kb downstream 10.0kb downstream 4960 true scaffold0393: 11587-16546 Medicago truncatula
Medtr0393s0040 10.0kb downstream 10.0kb downstream 3502 false scaffold0393: 13045-16546 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028150 5273 Angiosperm View MSA
122790104 5272 Eudicot View MSA
122304654 5265 Fabidae View MSA
124064735 5270 Rosid View MSA
123736705 5271 Pentapetalae View MSA
121344480 5274 Embryophyte View MSA
123428462 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.147        
cufflinks 0.009     Low Low
cufflinks 0.046     Low  
cufflinks 0.193        
cufflinks 0.059     Low  
cufflinks 0.906       High
cufflinks 0.402        
cufflinks 0.011     Low Low
cufflinks 0.224        

0 Strain