Gene : Medtr0408s0030 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR31321:SF11 - PECTINESTERASE 10-RELATED Description:  pectinesterase
Genomic Order:  2 Name:  ? Medtr0408s0030
Secondary Identifier:  ? PAC:31084884
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1081 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0408s0030 0.5kb upstream 0.5kb upstream 2776 true scaffold0408: 11303-14078 Medicago truncatula
Medtr0408s0030 0.5kb upstream 0.5kb upstream 500 false scaffold0408: 11303-11802 Medicago truncatula
Medtr0408s0030 0.5kb downstream 0.5kb downstream 2776 true scaffold0408: 11803-14578 Medicago truncatula
Medtr0408s0030 0.5kb downstream 0.5kb downstream 500 false scaffold0408: 14079-14578 Medicago truncatula
Medtr0408s0030 1.0kb upstream 1.0kb upstream 3276 true scaffold0408: 10803-14078 Medicago truncatula
Medtr0408s0030 1.0kb upstream 1.0kb upstream 1000 false scaffold0408: 10803-11802 Medicago truncatula
Medtr0408s0030 1.0kb downstream 1.0kb downstream 3276 true scaffold0408: 11803-15078 Medicago truncatula
Medtr0408s0030 1.0kb downstream 1.0kb downstream 1000 false scaffold0408: 14079-15078 Medicago truncatula
Medtr0408s0030 2.0kb upstream 2.0kb upstream 4276 true scaffold0408: 9803-14078 Medicago truncatula
Medtr0408s0030 2.0kb upstream 2.0kb upstream 2000 false scaffold0408: 9803-11802 Medicago truncatula
Medtr0408s0030 2.0kb downstream 2.0kb downstream 4276 true scaffold0408: 11803-16078 Medicago truncatula
Medtr0408s0030 2.0kb downstream 2.0kb downstream 2000 false scaffold0408: 14079-16078 Medicago truncatula
Medtr0408s0030 5.0kb upstream 5.0kb upstream 7276 true scaffold0408: 6803-14078 Medicago truncatula
Medtr0408s0030 5.0kb upstream 5.0kb upstream 5000 false scaffold0408: 6803-11802 Medicago truncatula
Medtr0408s0030 5.0kb downstream 5.0kb downstream 4276 true scaffold0408: 11803-16078 Medicago truncatula
Medtr0408s0030 5.0kb downstream 5.0kb downstream 2000 false scaffold0408: 14079-16078 Medicago truncatula
Medtr0408s0030 10.0kb upstream 10.0kb upstream 12276 true scaffold0408: 1803-14078 Medicago truncatula
Medtr0408s0030 10.0kb upstream 10.0kb upstream 10000 false scaffold0408: 1803-11802 Medicago truncatula
Medtr0408s0030 10.0kb downstream 10.0kb downstream 4276 true scaffold0408: 11803-16078 Medicago truncatula
Medtr0408s0030 10.0kb downstream 10.0kb downstream 2000 false scaffold0408: 14079-16078 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122288882 5265 Fabidae View MSA
124073271 5270 Rosid View MSA
123752785 5271 Pentapetalae View MSA
122796250 5272 Eudicot View MSA
122050958 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain