Gene : Medtr0538s0030 M. truncatula Mt4.0v1
Description:  Defensin related Genomic Order:  2
Name:  ? Medtr0538s0030 Secondary Identifier:  ? PAC:31105885
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0538s0030 0.5kb upstream 0.5kb upstream 840 true scaffold0538: 4091-4930 Medicago truncatula
Medtr0538s0030 0.5kb upstream 0.5kb upstream 500 false scaffold0538: 4091-4590 Medicago truncatula
Medtr0538s0030 0.5kb downstream 0.5kb downstream 840 true scaffold0538: 4591-5430 Medicago truncatula
Medtr0538s0030 0.5kb downstream 0.5kb downstream 500 false scaffold0538: 4931-5430 Medicago truncatula
Medtr0538s0030 1.0kb upstream 1.0kb upstream 1340 true scaffold0538: 3591-4930 Medicago truncatula
Medtr0538s0030 1.0kb upstream 1.0kb upstream 1000 false scaffold0538: 3591-4590 Medicago truncatula
Medtr0538s0030 1.0kb downstream 1.0kb downstream 1340 true scaffold0538: 4591-5930 Medicago truncatula
Medtr0538s0030 1.0kb downstream 1.0kb downstream 1000 false scaffold0538: 4931-5930 Medicago truncatula
Medtr0538s0030 2.0kb upstream 2.0kb upstream 2340 true scaffold0538: 2591-4930 Medicago truncatula
Medtr0538s0030 2.0kb upstream 2.0kb upstream 2000 false scaffold0538: 2591-4590 Medicago truncatula
Medtr0538s0030 2.0kb downstream 2.0kb downstream 2340 true scaffold0538: 4591-6930 Medicago truncatula
Medtr0538s0030 2.0kb downstream 2.0kb downstream 2000 false scaffold0538: 4931-6930 Medicago truncatula
Medtr0538s0030 5.0kb upstream 5.0kb upstream 4930 true scaffold0538: 1-4930 Medicago truncatula
Medtr0538s0030 5.0kb upstream 5.0kb upstream 4590 false scaffold0538: 1-4590 Medicago truncatula
Medtr0538s0030 5.0kb downstream 5.0kb downstream 5340 true scaffold0538: 4591-9930 Medicago truncatula
Medtr0538s0030 5.0kb downstream 5.0kb downstream 5000 false scaffold0538: 4931-9930 Medicago truncatula
Medtr0538s0030 10.0kb upstream 10.0kb upstream 4930 true scaffold0538: 1-4930 Medicago truncatula
Medtr0538s0030 10.0kb upstream 10.0kb upstream 4590 false scaffold0538: 1-4590 Medicago truncatula
Medtr0538s0030 10.0kb downstream 10.0kb downstream 6927 true scaffold0538: 4591-11517 Medicago truncatula
Medtr0538s0030 10.0kb downstream 10.0kb downstream 6587 false scaffold0538: 4931-11517 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121649357 5273 Angiosperm View MSA
122288674 5265 Fabidae View MSA
124028880 5270 Rosid View MSA
123602633 5271 Pentapetalae View MSA
122637313 5272 Eudicot View MSA
120921460 5274 Embryophyte View MSA
122962109 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.287        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain