Gene : Medtr0685s0030 M. truncatula Mt4.0v1
Defline:  (1 of 21) 1.1.1.195 - Cinnamyl-alcohol dehydrogenase / CAD Description:  cinnamyl alcohol dehydrogenase
Genomic Order:  2 Name:  ? Medtr0685s0030
Secondary Identifier:  ? PAC:31076820
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-361 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0685s0030 0.5kb upstream 0.5kb upstream 1919 true scaffold0685: 4463-6381 Medicago truncatula
Medtr0685s0030 0.5kb upstream 0.5kb upstream 500 false scaffold0685: 4463-4962 Medicago truncatula
Medtr0685s0030 0.5kb downstream 0.5kb downstream 1919 true scaffold0685: 4963-6881 Medicago truncatula
Medtr0685s0030 0.5kb downstream 0.5kb downstream 500 false scaffold0685: 6382-6881 Medicago truncatula
Medtr0685s0030 1.0kb upstream 1.0kb upstream 2419 true scaffold0685: 3963-6381 Medicago truncatula
Medtr0685s0030 1.0kb upstream 1.0kb upstream 1000 false scaffold0685: 3963-4962 Medicago truncatula
Medtr0685s0030 1.0kb downstream 1.0kb downstream 2419 true scaffold0685: 4963-7381 Medicago truncatula
Medtr0685s0030 1.0kb downstream 1.0kb downstream 1000 false scaffold0685: 6382-7381 Medicago truncatula
Medtr0685s0030 2.0kb upstream 2.0kb upstream 3419 true scaffold0685: 2963-6381 Medicago truncatula
Medtr0685s0030 2.0kb upstream 2.0kb upstream 2000 false scaffold0685: 2963-4962 Medicago truncatula
Medtr0685s0030 2.0kb downstream 2.0kb downstream 3255 true scaffold0685: 4963-8217 Medicago truncatula
Medtr0685s0030 2.0kb downstream 2.0kb downstream 1836 false scaffold0685: 6382-8217 Medicago truncatula
Medtr0685s0030 5.0kb upstream 5.0kb upstream 6381 true scaffold0685: 1-6381 Medicago truncatula
Medtr0685s0030 5.0kb upstream 5.0kb upstream 4962 false scaffold0685: 1-4962 Medicago truncatula
Medtr0685s0030 5.0kb downstream 5.0kb downstream 3255 true scaffold0685: 4963-8217 Medicago truncatula
Medtr0685s0030 5.0kb downstream 5.0kb downstream 1836 false scaffold0685: 6382-8217 Medicago truncatula
Medtr0685s0030 10.0kb upstream 10.0kb upstream 6381 true scaffold0685: 1-6381 Medicago truncatula
Medtr0685s0030 10.0kb upstream 10.0kb upstream 4962 false scaffold0685: 1-4962 Medicago truncatula
Medtr0685s0030 10.0kb downstream 10.0kb downstream 3255 true scaffold0685: 4963-8217 Medicago truncatula
Medtr0685s0030 10.0kb downstream 10.0kb downstream 1836 false scaffold0685: 6382-8217 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313544 5265 Fabidae View MSA
124073853 5270 Rosid View MSA
123752094 5271 Pentapetalae View MSA
122797549 5272 Eudicot View MSA
122050735 5273 Angiosperm View MSA
121350507 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low  
cufflinks 0.005     Low Low
cufflinks 0.022     Low High
cufflinks 0.017     Low  
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain