Gene : Medtr0723s0010 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF04717 - Type VI secretion system, phage-baseplate injector (Phage_base_V) Description:  bacteriophage regulatory protein, putative
Genomic Order:  1 Name:  ? Medtr0723s0010
Secondary Identifier:  ? PAC:31092294
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0723s0010 0.5kb upstream 0.5kb upstream 6724 true scaffold0723: 365-7088 Medicago truncatula
Medtr0723s0010 0.5kb upstream 0.5kb upstream 500 false scaffold0723: 365-864 Medicago truncatula
Medtr0723s0010 0.5kb downstream 0.5kb downstream 6536 true scaffold0723: 865-7400 Medicago truncatula
Medtr0723s0010 0.5kb downstream 0.5kb downstream 312 false scaffold0723: 7089-7400 Medicago truncatula
Medtr0723s0010 1.0kb upstream 1.0kb upstream 7088 true scaffold0723: 1-7088 Medicago truncatula
Medtr0723s0010 1.0kb upstream 1.0kb upstream 864 false scaffold0723: 1-864 Medicago truncatula
Medtr0723s0010 1.0kb downstream 1.0kb downstream 6536 true scaffold0723: 865-7400 Medicago truncatula
Medtr0723s0010 1.0kb downstream 1.0kb downstream 312 false scaffold0723: 7089-7400 Medicago truncatula
Medtr0723s0010 2.0kb upstream 2.0kb upstream 7088 true scaffold0723: 1-7088 Medicago truncatula
Medtr0723s0010 2.0kb upstream 2.0kb upstream 864 false scaffold0723: 1-864 Medicago truncatula
Medtr0723s0010 2.0kb downstream 2.0kb downstream 6536 true scaffold0723: 865-7400 Medicago truncatula
Medtr0723s0010 2.0kb downstream 2.0kb downstream 312 false scaffold0723: 7089-7400 Medicago truncatula
Medtr0723s0010 5.0kb upstream 5.0kb upstream 7088 true scaffold0723: 1-7088 Medicago truncatula
Medtr0723s0010 5.0kb upstream 5.0kb upstream 864 false scaffold0723: 1-864 Medicago truncatula
Medtr0723s0010 5.0kb downstream 5.0kb downstream 6536 true scaffold0723: 865-7400 Medicago truncatula
Medtr0723s0010 5.0kb downstream 5.0kb downstream 312 false scaffold0723: 7089-7400 Medicago truncatula
Medtr0723s0010 10.0kb upstream 10.0kb upstream 7088 true scaffold0723: 1-7088 Medicago truncatula
Medtr0723s0010 10.0kb upstream 10.0kb upstream 864 false scaffold0723: 1-864 Medicago truncatula
Medtr0723s0010 10.0kb downstream 10.0kb downstream 6536 true scaffold0723: 865-7400 Medicago truncatula
Medtr0723s0010 10.0kb downstream 10.0kb downstream 312 false scaffold0723: 7089-7400 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121632184 5273 Angiosperm Singleton cluster - no MSA
122270867 5265 Fabidae Singleton cluster - no MSA
124011541 5270 Rosid Singleton cluster - no MSA
123585440 5271 Pentapetalae Singleton cluster - no MSA
122620137 5272 Eudicot Singleton cluster - no MSA
120904288 5274 Embryophyte Singleton cluster - no MSA
122944943 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain