Gene : Medtr0997s0010 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR30258:SF2 - BACTERIOPHAGE N4 ADSORPTION PROTEIN B Description:  type II secretion system protein, putative
Genomic Order:  1 Name:  ? Medtr0997s0010
Secondary Identifier:  ? PAC:31053168
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0997s0010 0.5kb upstream 0.5kb upstream 3498 true scaffold0997: 43-3540 Medicago truncatula
Medtr0997s0010 0.5kb upstream 0.5kb upstream 223 false scaffold0997: 3318-3540 Medicago truncatula
Medtr0997s0010 0.5kb downstream 0.5kb downstream 3317 true scaffold0997: 1-3317 Medicago truncatula
Medtr0997s0010 0.5kb downstream 0.5kb downstream 42 false scaffold0997: 1-42 Medicago truncatula
Medtr0997s0010 1.0kb upstream 1.0kb upstream 3498 true scaffold0997: 43-3540 Medicago truncatula
Medtr0997s0010 1.0kb upstream 1.0kb upstream 223 false scaffold0997: 3318-3540 Medicago truncatula
Medtr0997s0010 1.0kb downstream 1.0kb downstream 3317 true scaffold0997: 1-3317 Medicago truncatula
Medtr0997s0010 1.0kb downstream 1.0kb downstream 42 false scaffold0997: 1-42 Medicago truncatula
Medtr0997s0010 2.0kb upstream 2.0kb upstream 3498 true scaffold0997: 43-3540 Medicago truncatula
Medtr0997s0010 2.0kb upstream 2.0kb upstream 223 false scaffold0997: 3318-3540 Medicago truncatula
Medtr0997s0010 2.0kb downstream 2.0kb downstream 3317 true scaffold0997: 1-3317 Medicago truncatula
Medtr0997s0010 2.0kb downstream 2.0kb downstream 42 false scaffold0997: 1-42 Medicago truncatula
Medtr0997s0010 5.0kb upstream 5.0kb upstream 3498 true scaffold0997: 43-3540 Medicago truncatula
Medtr0997s0010 5.0kb upstream 5.0kb upstream 223 false scaffold0997: 3318-3540 Medicago truncatula
Medtr0997s0010 5.0kb downstream 5.0kb downstream 3317 true scaffold0997: 1-3317 Medicago truncatula
Medtr0997s0010 5.0kb downstream 5.0kb downstream 42 false scaffold0997: 1-42 Medicago truncatula
Medtr0997s0010 10.0kb upstream 10.0kb upstream 3498 true scaffold0997: 43-3540 Medicago truncatula
Medtr0997s0010 10.0kb upstream 10.0kb upstream 223 false scaffold0997: 3318-3540 Medicago truncatula
Medtr0997s0010 10.0kb downstream 10.0kb downstream 3317 true scaffold0997: 1-3317 Medicago truncatula
Medtr0997s0010 10.0kb downstream 10.0kb downstream 42 false scaffold0997: 1-42 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121632278 5273 Angiosperm Singleton cluster - no MSA
122270965 5265 Fabidae Singleton cluster - no MSA
124011635 5270 Rosid Singleton cluster - no MSA
123585534 5271 Pentapetalae Singleton cluster - no MSA
122620231 5272 Eudicot Singleton cluster - no MSA
120904382 5274 Embryophyte Singleton cluster - no MSA
122945037 5275 Viridiplantae Singleton cluster - no MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain