Gene : Medtr0122s0020 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR31692:SF5 - EXPANSIN-B1-RELATED Description:  expansin-like protein B1
Genomic Order:  1 Name:  ? Medtr0122s0020
Secondary Identifier:  ? PAC:31101216
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0122s0020 0.5kb upstream 0.5kb upstream 5401 true scaffold0122: 5905-11305 Medicago truncatula
Medtr0122s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0122: 10806-11305 Medicago truncatula
Medtr0122s0020 0.5kb downstream 0.5kb downstream 5401 true scaffold0122: 5405-10805 Medicago truncatula
Medtr0122s0020 0.5kb downstream 0.5kb downstream 500 false scaffold0122: 5405-5904 Medicago truncatula
Medtr0122s0020 1.0kb upstream 1.0kb upstream 5901 true scaffold0122: 5905-11805 Medicago truncatula
Medtr0122s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0122: 10806-11805 Medicago truncatula
Medtr0122s0020 1.0kb downstream 1.0kb downstream 5901 true scaffold0122: 4905-10805 Medicago truncatula
Medtr0122s0020 1.0kb downstream 1.0kb downstream 1000 false scaffold0122: 4905-5904 Medicago truncatula
Medtr0122s0020 2.0kb upstream 2.0kb upstream 6901 true scaffold0122: 5905-12805 Medicago truncatula
Medtr0122s0020 2.0kb upstream 2.0kb upstream 2000 false scaffold0122: 10806-12805 Medicago truncatula
Medtr0122s0020 2.0kb downstream 2.0kb downstream 6901 true scaffold0122: 3905-10805 Medicago truncatula
Medtr0122s0020 2.0kb downstream 2.0kb downstream 2000 false scaffold0122: 3905-5904 Medicago truncatula
Medtr0122s0020 5.0kb upstream 5.0kb upstream 9901 true scaffold0122: 5905-15805 Medicago truncatula
Medtr0122s0020 5.0kb upstream 5.0kb upstream 5000 false scaffold0122: 10806-15805 Medicago truncatula
Medtr0122s0020 5.0kb downstream 5.0kb downstream 9901 true scaffold0122: 905-10805 Medicago truncatula
Medtr0122s0020 5.0kb downstream 5.0kb downstream 5000 false scaffold0122: 905-5904 Medicago truncatula
Medtr0122s0020 10.0kb upstream 10.0kb upstream 14901 true scaffold0122: 5905-20805 Medicago truncatula
Medtr0122s0020 10.0kb upstream 10.0kb upstream 10000 false scaffold0122: 10806-20805 Medicago truncatula
Medtr0122s0020 10.0kb downstream 10.0kb downstream 10805 true scaffold0122: 1-10805 Medicago truncatula
Medtr0122s0020 10.0kb downstream 10.0kb downstream 5904 false scaffold0122: 1-5904 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040952 5273 Angiosperm View MSA
122300814 5265 Fabidae View MSA
124061780 5270 Rosid View MSA
123742041 5271 Pentapetalae View MSA
122787625 5272 Eudicot View MSA
123429074 5275 Viridiplantae View MSA
121351768 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.073       Low
cufflinks 0.238        
cufflinks 0.104        
cufflinks 1.88       High
cufflinks 0.182        
cufflinks 1.962       High
cufflinks 0.854        
cufflinks 0.084       Low
cufflinks 2.343       High

0 Strain