Gene : Medtr0227s0020 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR21141:SF48 - 60S ACIDIC RIBOSOMAL PROTEIN P2-4 Description:  60S acidic ribosomal protein
Genomic Order:  2 Name:  ? Medtr0227s0020
Secondary Identifier:  ? PAC:31101280
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0227s0020 0.5kb upstream 0.5kb upstream 2364 true scaffold0227: 5926-8289 Medicago truncatula
Medtr0227s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0227: 7790-8289 Medicago truncatula
Medtr0227s0020 0.5kb downstream 0.5kb downstream 2364 true scaffold0227: 5426-7789 Medicago truncatula
Medtr0227s0020 0.5kb downstream 0.5kb downstream 500 false scaffold0227: 5426-5925 Medicago truncatula
Medtr0227s0020 1.0kb upstream 1.0kb upstream 2864 true scaffold0227: 5926-8789 Medicago truncatula
Medtr0227s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0227: 7790-8789 Medicago truncatula
Medtr0227s0020 1.0kb downstream 1.0kb downstream 2864 true scaffold0227: 4926-7789 Medicago truncatula
Medtr0227s0020 1.0kb downstream 1.0kb downstream 1000 false scaffold0227: 4926-5925 Medicago truncatula
Medtr0227s0020 2.0kb upstream 2.0kb upstream 3864 true scaffold0227: 5926-9789 Medicago truncatula
Medtr0227s0020 2.0kb upstream 2.0kb upstream 2000 false scaffold0227: 7790-9789 Medicago truncatula
Medtr0227s0020 2.0kb downstream 2.0kb downstream 3864 true scaffold0227: 3926-7789 Medicago truncatula
Medtr0227s0020 2.0kb downstream 2.0kb downstream 2000 false scaffold0227: 3926-5925 Medicago truncatula
Medtr0227s0020 5.0kb upstream 5.0kb upstream 6864 true scaffold0227: 5926-12789 Medicago truncatula
Medtr0227s0020 5.0kb upstream 5.0kb upstream 5000 false scaffold0227: 7790-12789 Medicago truncatula
Medtr0227s0020 5.0kb downstream 5.0kb downstream 6864 true scaffold0227: 926-7789 Medicago truncatula
Medtr0227s0020 5.0kb downstream 5.0kb downstream 5000 false scaffold0227: 926-5925 Medicago truncatula
Medtr0227s0020 10.0kb upstream 10.0kb upstream 11864 true scaffold0227: 5926-17789 Medicago truncatula
Medtr0227s0020 10.0kb upstream 10.0kb upstream 10000 false scaffold0227: 7790-17789 Medicago truncatula
Medtr0227s0020 10.0kb downstream 10.0kb downstream 7789 true scaffold0227: 1-7789 Medicago truncatula
Medtr0227s0020 10.0kb downstream 10.0kb downstream 5925 false scaffold0227: 1-5925 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041516 5273 Angiosperm View MSA
122295493 5265 Fabidae View MSA
124073066 5270 Rosid View MSA
123742141 5271 Pentapetalae View MSA
122795888 5272 Eudicot View MSA
123429183 5275 Viridiplantae View MSA
121351420 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.205        
cufflinks 8.566        
cufflinks 9.131        
cufflinks 69.108     High High
cufflinks 24.42     High  
cufflinks 99.901     High High
cufflinks 15.808     High  
cufflinks 12.232     High  
cufflinks 31.326     High  

0 Strain