Gene : Medtr0262s0030 M. truncatula Mt4.0v1
Defline:  (1 of 3) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Description:  tRNA-splicing endonuclease subunit Sen2
Genomic Order:  2 Name:  ? Medtr0262s0030
Secondary Identifier:  ? PAC:31105858
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6689 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0262s0030 0.5kb upstream 0.5kb upstream 3089 true scaffold0262: 5694-8782 Medicago truncatula
Medtr0262s0030 0.5kb upstream 0.5kb upstream 500 false scaffold0262: 8283-8782 Medicago truncatula
Medtr0262s0030 0.5kb downstream 0.5kb downstream 3089 true scaffold0262: 5194-8282 Medicago truncatula
Medtr0262s0030 0.5kb downstream 0.5kb downstream 500 false scaffold0262: 5194-5693 Medicago truncatula
Medtr0262s0030 1.0kb upstream 1.0kb upstream 3589 true scaffold0262: 5694-9282 Medicago truncatula
Medtr0262s0030 1.0kb upstream 1.0kb upstream 1000 false scaffold0262: 8283-9282 Medicago truncatula
Medtr0262s0030 1.0kb downstream 1.0kb downstream 3589 true scaffold0262: 4694-8282 Medicago truncatula
Medtr0262s0030 1.0kb downstream 1.0kb downstream 1000 false scaffold0262: 4694-5693 Medicago truncatula
Medtr0262s0030 2.0kb upstream 2.0kb upstream 4589 true scaffold0262: 5694-10282 Medicago truncatula
Medtr0262s0030 2.0kb upstream 2.0kb upstream 2000 false scaffold0262: 8283-10282 Medicago truncatula
Medtr0262s0030 2.0kb downstream 2.0kb downstream 4589 true scaffold0262: 3694-8282 Medicago truncatula
Medtr0262s0030 2.0kb downstream 2.0kb downstream 2000 false scaffold0262: 3694-5693 Medicago truncatula
Medtr0262s0030 5.0kb upstream 5.0kb upstream 7589 true scaffold0262: 5694-13282 Medicago truncatula
Medtr0262s0030 5.0kb upstream 5.0kb upstream 5000 false scaffold0262: 8283-13282 Medicago truncatula
Medtr0262s0030 5.0kb downstream 5.0kb downstream 7589 true scaffold0262: 694-8282 Medicago truncatula
Medtr0262s0030 5.0kb downstream 5.0kb downstream 5000 false scaffold0262: 694-5693 Medicago truncatula
Medtr0262s0030 10.0kb upstream 10.0kb upstream 12589 true scaffold0262: 5694-18282 Medicago truncatula
Medtr0262s0030 10.0kb upstream 10.0kb upstream 10000 false scaffold0262: 8283-18282 Medicago truncatula
Medtr0262s0030 10.0kb downstream 10.0kb downstream 8282 true scaffold0262: 1-8282 Medicago truncatula
Medtr0262s0030 10.0kb downstream 10.0kb downstream 5693 false scaffold0262: 1-5693 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121780848 5273 Angiosperm View MSA
122316338 5265 Fabidae View MSA
124038584 5270 Rosid View MSA
123748078 5271 Pentapetalae View MSA
122772424 5272 Eudicot View MSA
121052447 5274 Embryophyte View MSA
123092494 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.107        
cufflinks 1.128        
cufflinks 1.268        
cufflinks 0.388        
cufflinks 1.491        
cufflinks 0.057     Low Low
cufflinks 0.611        
cufflinks 1.051        
cufflinks 0.594        

0 Strain