Gene : SapurV1A.1490s0020 S. purpurea v1.0
Defline:  (1 of 7) K13789 - geranylgeranyl diphosphate synthase, type II (GGPS) Genomic Order:  2
Name:  ? SapurV1A.1490s0020 Secondary Identifier:  ? PAC:31399170
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Spurpurea PWY-5120 Salix purpurea pathologic  
Spurpurea PWY-5910 Salix purpurea pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
SapurV1A.1490s0020 0.5kb upstream 0.5kb upstream 2703 true Scaffold1490: 9369-12071 Salix purpurea
SapurV1A.1490s0020 0.5kb upstream 0.5kb upstream 500 false Scaffold1490: 9369-9868 Salix purpurea
SapurV1A.1490s0020 0.5kb downstream 0.5kb downstream 2703 true Scaffold1490: 9869-12571 Salix purpurea
SapurV1A.1490s0020 0.5kb downstream 0.5kb downstream 500 false Scaffold1490: 12072-12571 Salix purpurea
SapurV1A.1490s0020 1.0kb upstream 1.0kb upstream 3203 true Scaffold1490: 8869-12071 Salix purpurea
SapurV1A.1490s0020 1.0kb upstream 1.0kb upstream 1000 false Scaffold1490: 8869-9868 Salix purpurea
SapurV1A.1490s0020 1.0kb downstream 1.0kb downstream 3203 true Scaffold1490: 9869-13071 Salix purpurea
SapurV1A.1490s0020 1.0kb downstream 1.0kb downstream 1000 false Scaffold1490: 12072-13071 Salix purpurea
SapurV1A.1490s0020 2.0kb upstream 2.0kb upstream 4203 true Scaffold1490: 7869-12071 Salix purpurea
SapurV1A.1490s0020 2.0kb upstream 2.0kb upstream 2000 false Scaffold1490: 7869-9868 Salix purpurea
SapurV1A.1490s0020 2.0kb downstream 2.0kb downstream 4203 true Scaffold1490: 9869-14071 Salix purpurea
SapurV1A.1490s0020 2.0kb downstream 2.0kb downstream 2000 false Scaffold1490: 12072-14071 Salix purpurea
SapurV1A.1490s0020 5.0kb upstream 5.0kb upstream 7203 true Scaffold1490: 4869-12071 Salix purpurea
SapurV1A.1490s0020 5.0kb upstream 5.0kb upstream 5000 false Scaffold1490: 4869-9868 Salix purpurea
SapurV1A.1490s0020 5.0kb downstream 5.0kb downstream 7203 true Scaffold1490: 9869-17071 Salix purpurea
SapurV1A.1490s0020 5.0kb downstream 5.0kb downstream 5000 false Scaffold1490: 12072-17071 Salix purpurea
SapurV1A.1490s0020 10.0kb upstream 10.0kb upstream 12071 true Scaffold1490: 1-12071 Salix purpurea
SapurV1A.1490s0020 10.0kb upstream 10.0kb upstream 9868 false Scaffold1490: 1-9868 Salix purpurea
SapurV1A.1490s0020 10.0kb downstream 10.0kb downstream 12203 true Scaffold1490: 9869-22071 Salix purpurea
SapurV1A.1490s0020 10.0kb downstream 10.0kb downstream 10000 false Scaffold1490: 12072-22071 Salix purpurea

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122456531 5262 Malpighiales View MSA
124237101 5268 Malvidae View MSA
124062615 5270 Rosid View MSA
123750127 5271 Pentapetalae View MSA
122794006 5272 Eudicot View MSA
122045672 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain