GO Term : GO:0000439 core TFIIH complex GO

Namespace:  cellular_component Obsolete:  false
description  The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.

0 Cross References

1 Data Sets

Name URL
InterPro domain GO annotations  

1 Ontology

Name
GO

10158 Ontology Annotations

Class GO Term Gene Name Db
GOAnnotation GO:0000439 432615  
OntologyAnnotation GO:0000439 432615 GO
GOAnnotation GO:0000439 422967  
OntologyAnnotation GO:0000439 422967 GO
OntologyAnnotation GO:0000439 121159 GO
GOAnnotation GO:0000439 121159  
GOAnnotation GO:0000439 232450  
OntologyAnnotation GO:0000439 232450 GO
GOAnnotation GO:0000439 438480  
OntologyAnnotation GO:0000439 438480 GO
GOAnnotation GO:0000439 evm.TU.supercontig_139.77  
OntologyAnnotation GO:0000439 evm.model.supercontig_139.77 GO
OntologyAnnotation GO:0000439 evm.model.supercontig_181.12 GO
GOAnnotation GO:0000439 evm.TU.supercontig_181.12  
OntologyAnnotation GO:0000439 evm.model.supercontig_27.58 GO
GOAnnotation GO:0000439 evm.TU.supercontig_27.58  
OntologyAnnotation GO:0000439 evm.model.supercontig_29.74 GO
GOAnnotation GO:0000439 evm.TU.supercontig_29.74  
GOAnnotation GO:0000439 evm.TU.supercontig_36.54  
OntologyAnnotation GO:0000439 evm.model.supercontig_36.54 GO
OntologyAnnotation GO:0000439 28525.m000265 GO
GOAnnotation GO:0000439 28525.t000006  
OntologyAnnotation GO:0000439 29308.m000180 GO
GOAnnotation GO:0000439 29308.t000006  
OntologyAnnotation GO:0000439 29851.m002397 GO
GOAnnotation GO:0000439 29851.t000039  
GOAnnotation GO:0000439 29908.t000225  
OntologyAnnotation GO:0000439 29908.m006174 GO
GOAnnotation GO:0000439 30111.t000034  
OntologyAnnotation GO:0000439 30111.m000731 GO

16 Parents

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043234 protein complex A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0043231 intracellular membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
GO:0000439 core TFIIH complex The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.
GO:0044464 cell part Any constituent part of a cell, the basic structural and functional unit of all organisms.
GO:0044424 intracellular part Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0032991 macromolecular complex A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which the constituent parts function together.
GO:0005575 cellular_component The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
GO:0005623 cell The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
GO:0044428 nuclear part Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.
GO:0043227 membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
GO:0043226 organelle Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.
GO:0043229 intracellular organelle Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
GO:0044422 organelle part Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.
GO:0044446 intracellular organelle part A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.

24 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
has_part GO:0000439 GO:0000112
is_a GO:0000439 GO:0000438
is_a GO:0000439 GO:0000438
is_a GO:0043234 GO:0000439
is_a GO:0044428 GO:0000439
part of GO:0043227 GO:0000439
part of GO:0043226 GO:0000439
part of GO:0043229 GO:0000439
is_a GO:0044464 GO:0000439
is_a GO:0044422 GO:0000439
is_a GO:0044446 GO:0000439
is_a GO:0044424 GO:0000439
is_a GO:0005575 GO:0000439
part of GO:0005622 GO:0000439
part of GO:0005634 GO:0000439
part of GO:0005623 GO:0000439
part of GO:0005575 GO:0000439
is_a GO:0032991 GO:0000439
part of GO:0044424 GO:0000439
part of GO:0044464 GO:0000439
part of GO:0043231 GO:0000439
is_a GO:0000439 GO:0000440
is_a GO:0000439 GO:0000440
has_part GO:0000439 GO:0005675

2 Synonyms

Name Type
GO:0000441 alt_id
SSL2-core TFIIH complex synonym