Gene : evm_27.TU.AmTr_v1.0_scaffold00001.308 A. trichopoda v1.0
Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  305
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00001.308 Secondary Identifier:  ? PAC:31551209
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda PWY-7560 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00001.308 0.5kb upstream 0.5kb upstream 7261 true AmTr_v1.0_scaffold00001: 6166169-6173429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00001: 6166169-6166668 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 0.5kb downstream 0.5kb downstream 7261 true AmTr_v1.0_scaffold00001: 6166669-6173929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00001: 6173430-6173929 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 1.0kb upstream 1.0kb upstream 7761 true AmTr_v1.0_scaffold00001: 6165669-6173429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00001: 6165669-6166668 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 1.0kb downstream 1.0kb downstream 7761 true AmTr_v1.0_scaffold00001: 6166669-6174429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00001: 6173430-6174429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 2.0kb upstream 2.0kb upstream 8761 true AmTr_v1.0_scaffold00001: 6164669-6173429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00001: 6164669-6166668 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 2.0kb downstream 2.0kb downstream 8761 true AmTr_v1.0_scaffold00001: 6166669-6175429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00001: 6173430-6175429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 5.0kb upstream 5.0kb upstream 11761 true AmTr_v1.0_scaffold00001: 6161669-6173429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00001: 6161669-6166668 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 5.0kb downstream 5.0kb downstream 11761 true AmTr_v1.0_scaffold00001: 6166669-6178429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00001: 6173430-6178429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 10.0kb upstream 10.0kb upstream 16761 true AmTr_v1.0_scaffold00001: 6156669-6173429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00001: 6156669-6166668 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 10.0kb downstream 10.0kb downstream 16761 true AmTr_v1.0_scaffold00001: 6166669-6183429 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00001.308 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00001: 6173430-6183429 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain